Wall clock time and date at job start Mon Mar 30 2020 02:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46849 * 2 1 4 4 C 1.50693 * 109.47277 * 120.00506 * 2 1 3 5 5 H 1.08004 * 120.00121 * 114.39096 * 4 2 1 6 6 C 1.37884 * 120.00003 * 294.39226 * 4 2 1 7 7 N 1.31512 * 119.99763 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99988 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47071 * 89.99947 * 8 6 4 10 10 H 1.48505 * 109.46867 * 209.99816 * 8 6 4 11 11 H 1.48494 * 109.47308 * 330.00197 * 8 6 4 12 12 N 1.46898 * 109.47304 * 240.00466 * 2 1 3 13 13 C 1.47961 * 111.00170 * 177.86448 * 12 2 1 14 14 C 1.53935 * 86.18451 * 222.41808 * 13 12 2 15 15 C 1.48197 * 111.07265 * 78.43544 * 12 2 1 16 16 H 1.08999 * 113.75681 * 23.23817 * 15 12 2 17 17 C 1.53002 * 113.82182 * 251.81352 * 15 12 2 18 18 C 1.53786 * 113.61046 * 186.28275 * 17 15 12 19 19 C 1.53780 * 87.07934 * 220.01958 * 18 17 15 20 20 C 1.53775 * 87.08452 * 25.43066 * 19 18 17 21 21 H 1.09004 * 109.46688 * 172.42984 * 1 2 3 22 22 H 1.08994 * 109.46983 * 292.43131 * 1 2 3 23 23 H 1.09001 * 109.46876 * 52.43552 * 1 2 3 24 24 H 0.97004 * 120.00251 * 180.02562 * 7 6 4 25 25 H 1.08996 * 113.75516 * 108.10133 * 13 12 2 26 26 H 1.08995 * 113.85984 * 336.75274 * 13 12 2 27 27 H 1.08992 * 113.73715 * 138.07790 * 14 13 12 28 28 H 1.09006 * 113.73535 * 269.26176 * 14 13 12 29 29 H 1.08992 * 112.85103 * 317.58669 * 17 15 12 30 30 H 1.08999 * 113.61313 * 334.56011 * 18 17 15 31 31 H 1.08996 * 113.61599 * 105.46833 * 18 17 15 32 32 H 1.09008 * 113.61235 * 270.88384 * 19 18 17 33 33 H 1.09004 * 113.61935 * 139.98433 * 19 18 17 34 34 H 1.08996 * 113.62126 * 220.01921 * 20 19 18 35 35 H 1.09010 * 113.68757 * 89.12731 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5766 -1.6384 1.1337 6 6 1.7973 -0.1760 2.4794 7 7 1.1350 0.9542 2.5970 8 14 2.4194 -1.0570 4.0046 9 1 3.7867 -0.5777 4.3300 10 1 1.5111 -0.7739 5.1448 11 1 2.4549 -2.5198 3.7513 12 7 2.0197 -0.6924 -1.1995 13 6 3.4979 -0.6677 -1.2597 14 6 3.3292 -0.3589 -2.7583 15 6 1.9360 0.1836 -2.3919 16 1 1.9273 1.2476 -2.1554 17 6 0.8384 -0.2193 -3.3788 18 6 0.8537 0.5953 -4.6831 19 6 -0.6820 0.6062 -4.6019 20 6 -0.5245 0.4285 -3.0826 21 1 -0.3633 -1.0188 -0.1354 22 1 -0.3633 0.3921 0.9499 23 1 -0.3633 0.6265 -0.8146 24 1 0.9699 1.3305 3.4757 25 1 3.9617 -1.6336 -1.0598 26 1 3.9488 0.1460 -0.6916 27 1 4.0136 0.4042 -3.1287 28 1 3.3020 -1.2475 -3.3890 29 1 0.7850 -1.2965 -3.5358 30 1 1.3034 1.5824 -4.5762 31 1 1.2418 0.0425 -5.5386 32 1 -1.1513 -0.2453 -5.0947 33 1 -1.1276 1.5594 -4.8862 34 1 -1.2489 -0.2589 -2.6459 35 1 -0.4515 1.3693 -2.5369 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885364408.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:51 Heat of formation + Delta-G solvation = 26.524847 kcal Electronic energy + Delta-G solvation = -14418.387641 eV Core-core repulsion = 12223.962308 eV Total energy + Delta-G solvation = -2194.425332 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.11216 -38.57056 -35.53577 -32.50051 -28.82673 -27.47325 -27.16092 -26.23191 -23.91058 -22.11557 -20.39366 -20.26738 -18.38192 -17.14129 -16.55296 -16.14664 -15.83619 -15.18301 -14.62512 -14.36910 -13.83778 -13.31545 -13.12878 -13.03638 -12.82262 -12.75945 -12.68919 -12.53241 -12.25296 -12.17616 -11.77669 -11.30438 -11.21805 -10.98164 -10.77349 -10.59414 -10.54628 -9.34704 -8.15585 -6.27314 1.37659 1.38754 1.49809 2.39253 3.13851 3.24344 3.70213 3.87122 3.94522 3.99468 4.18255 4.37432 4.45463 4.69592 4.75722 4.83585 4.87584 4.91061 4.94720 4.98998 5.03239 5.11329 5.13918 5.17849 5.22540 5.35556 5.43541 5.50331 5.56970 5.68053 5.75686 6.08755 6.30577 6.61445 6.88975 7.42126 8.91605 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047594 B = 0.008832 C = 0.007825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.173618 B = 3169.475689 C = 3577.394012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.189 3.811 3 H -0.032 1.032 4 C -0.522 4.522 5 H 0.051 0.949 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.270 1.270 12 N -0.486 5.486 13 C 0.011 3.989 14 C -0.120 4.120 15 C 0.036 3.964 16 H 0.049 0.951 17 C -0.086 4.086 18 C -0.121 4.121 19 C -0.131 4.131 20 C -0.143 4.143 21 H 0.027 0.973 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.262 0.738 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.541 -0.748 -13.027 13.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.081 3.919 3 H -0.014 1.014 4 C -0.560 4.560 5 H 0.069 0.931 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.195 1.195 12 N -0.209 5.209 13 C -0.118 4.118 14 C -0.158 4.158 15 C -0.074 4.074 16 H 0.067 0.933 17 C -0.104 4.104 18 C -0.159 4.159 19 C -0.168 4.168 20 C -0.181 4.181 21 H 0.046 0.954 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.112 -1.248 -12.846 12.907 hybrid contribution 0.517 0.652 1.662 1.859 sum 0.630 -0.597 -11.183 11.217 Atomic orbital electron populations 1.21595 0.97478 0.98429 0.99745 1.19478 0.93069 0.90572 0.88772 1.01415 1.21377 1.35105 1.07945 0.91595 0.93058 1.25746 0.95436 0.95714 1.01984 1.70057 1.41554 1.20188 1.24276 0.85539 0.78195 0.78985 0.78829 1.19992 1.20683 1.19459 1.68511 1.09152 1.40246 1.03004 1.23490 0.91289 1.00617 0.96437 1.23303 0.95436 1.01771 0.95266 1.23442 0.96300 0.94849 0.92801 0.93325 1.22332 0.93445 0.99717 0.94947 1.22823 0.96385 1.00162 0.96505 1.22806 0.96607 1.02580 0.94793 1.22964 0.97703 1.00045 0.97367 0.95426 0.93893 0.94064 0.92937 0.90650 0.93864 0.90114 0.88174 0.89325 0.90317 0.89837 0.89167 0.90774 0.92838 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.85 9.00 71.98 0.65 -5.20 16 2 C 0.19 10.05 1.58 44.17 0.07 10.12 16 3 H -0.03 -1.88 7.67 -2.38 -0.02 -1.90 16 4 C -0.52 -30.04 7.99 25.60 0.20 -29.83 16 5 H 0.05 2.97 7.64 -2.91 -0.02 2.94 16 6 C 0.01 0.56 5.28 84.66 0.45 1.01 16 7 N -0.92 -54.92 11.74 21.45 0.25 -54.67 16 8 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 N -0.49 -21.60 5.78 -862.28 -4.98 -26.58 16 13 C 0.01 0.43 7.08 86.41 0.61 1.04 16 14 C -0.12 -3.67 7.84 31.24 0.24 -3.42 16 15 C 0.04 1.27 2.62 44.98 0.12 1.39 16 16 H 0.05 1.92 7.66 -2.39 -0.02 1.90 16 17 C -0.09 -2.55 3.68 -10.26 -0.04 -2.59 16 18 C -0.12 -2.71 7.64 31.12 0.24 -2.48 16 19 C -0.13 -2.89 8.08 31.12 0.25 -2.64 16 20 C -0.14 -4.32 5.64 31.12 0.18 -4.14 16 21 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 22 H 0.04 2.41 6.40 -2.39 -0.02 2.40 16 23 H 0.04 1.87 4.70 -2.39 -0.01 1.86 16 24 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 25 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 26 H 0.04 1.87 7.92 -2.39 -0.02 1.86 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.10 2.69 8.10 -2.38 -0.02 2.67 16 29 H 0.09 2.69 8.14 -2.39 -0.02 2.68 16 30 H 0.08 1.76 8.10 -2.39 -0.02 1.74 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.71 8.09 -2.39 -0.02 1.69 16 35 H 0.06 2.09 7.09 -2.38 -0.02 2.07 16 Total: -1.00 -62.95 273.49 1.30 -61.65 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 1.04 Total: 9.28 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 2.97 Total: -36.75 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -4.73 Total: -81.25 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -62.95 1.30 -61.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885364408.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.177 kcal (2) G-P(sol) polarization free energy of solvation -62.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds