Wall clock time and date at job start Mon Mar 30 2020 02:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38227 * 120.00771 * 2 1 4 4 C 1.38221 * 120.01685 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.02231 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99358 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 90.00024 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48496 * 109.47341 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46983 * 120.00379 * 11 9 7 14 14 H 1.48503 * 109.47491 * 240.00192 * 11 9 7 15 15 C 1.38190 * 120.01626 * 0.23507 * 5 4 3 16 16 C 1.38332 * 120.00167 * 179.97438 * 2 1 3 17 17 Cl 1.73598 * 120.01937 * 0.04545 * 16 2 1 18 18 H 1.09000 * 109.47335 * 90.00337 * 1 2 3 19 19 H 1.09001 * 109.46941 * 210.00457 * 1 2 3 20 20 H 1.09002 * 109.46766 * 329.99771 * 1 2 3 21 21 H 1.08006 * 119.99267 * 359.95686 * 3 2 1 22 22 H 1.07997 * 119.98762 * 179.97438 * 4 3 2 23 23 H 1.09004 * 109.47210 * 330.00318 * 6 5 4 24 24 H 1.08994 * 109.47551 * 209.99970 * 6 5 4 25 25 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 26 26 H 1.08002 * 120.01459 * 179.74443 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2725 0.0002 0.0005 6 6 5.7795 0.0012 0.0005 7 6 6.2818 0.0016 1.4214 8 1 5.5800 0.0007 2.2423 9 6 7.6374 -0.0033 1.6734 10 7 8.4920 -0.0026 0.6738 11 14 8.2599 -0.0107 3.4345 12 1 7.1049 -0.0107 4.3679 13 1 9.0813 -1.2264 3.6641 14 1 9.0885 1.1986 3.6718 15 6 3.5826 -1.1971 -0.0049 16 6 2.1987 -1.1980 0.0005 17 17 1.3313 -2.7017 0.0000 18 1 -0.3634 -0.0001 -1.0276 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3633 0.8900 0.5139 21 1 1.6583 2.1324 -0.0007 22 1 4.1202 2.1327 0.0001 23 1 6.1423 0.8915 -0.5133 24 1 6.1435 -0.8884 -0.5132 25 1 9.4457 -0.0057 0.8511 26 1 4.1231 -2.1321 -0.0091 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036203808.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:37 Heat of formation + Delta-G solvation = -7.000464 kcal Electronic energy + Delta-G solvation = -11171.483664 eV Core-core repulsion = 9046.928878 eV Total energy + Delta-G solvation = -2124.554785 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 210.051 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.96038 -36.11263 -33.89659 -32.19004 -30.17818 -28.85128 -25.51651 -22.69080 -22.20604 -20.16872 -16.39698 -15.70449 -15.27134 -14.79508 -14.41324 -13.80779 -13.26519 -12.52476 -12.36154 -12.26157 -11.99190 -11.42145 -11.29293 -10.91799 -10.83482 -10.70321 -10.45618 -10.41296 -9.59481 -9.45788 -8.47316 -8.28132 -7.80695 -6.08967 -4.13184 1.73930 1.88039 2.53917 3.27251 3.35083 3.40210 4.20382 4.44330 5.16442 5.20115 5.26392 5.53957 5.74444 5.78171 5.99432 6.05207 6.06370 6.28375 6.57519 6.81680 6.93575 7.03620 7.38921 7.52733 7.72480 7.86713 8.24922 8.92074 9.51192 11.00948 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.043079 B = 0.007774 C = 0.007323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.810978 B = 3600.725903 C = 3822.725694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.111 4.111 3 C -0.112 4.112 4 C -0.116 4.116 5 C -0.026 4.026 6 C 0.047 3.953 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.059 3.941 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.283 1.283 15 C -0.112 4.112 16 C -0.033 4.033 17 Cl -0.091 7.091 18 H 0.065 0.935 19 H 0.067 0.933 20 H 0.063 0.937 21 H 0.121 0.879 22 H 0.125 0.875 23 H 0.032 0.968 24 H 0.031 0.969 25 H 0.262 0.738 26 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.635 -0.227 -1.697 12.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.112 4.112 3 C -0.130 4.130 4 C -0.134 4.134 5 C -0.026 4.026 6 C 0.011 3.989 7 C -0.552 4.552 8 H 0.076 0.924 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.723 3.277 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.131 4.131 16 C -0.059 4.059 17 Cl -0.062 7.062 18 H 0.084 0.916 19 H 0.086 0.914 20 H 0.082 0.918 21 H 0.139 0.861 22 H 0.143 0.857 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.529 -0.367 -1.735 12.654 hybrid contribution 0.442 -0.161 0.972 1.080 sum -12.087 -0.527 -0.763 12.123 Atomic orbital electron populations 1.20738 0.91239 1.02621 1.02002 1.19508 0.95920 0.91615 1.04173 1.20880 0.94320 0.96370 1.01429 1.21202 0.93391 0.98671 1.00182 1.20672 0.99204 0.91148 0.91614 1.18390 0.83851 0.98692 0.98002 1.21080 0.91522 1.51232 0.91333 0.92351 1.25008 0.96858 0.95049 0.97339 1.69966 1.02183 1.50354 1.30685 0.86469 0.78894 0.77674 0.84640 1.19626 1.20884 1.20888 1.21004 0.91023 0.99536 1.01495 1.20776 0.92308 0.85546 1.07296 1.98304 1.77267 1.33501 1.97144 0.91592 0.91449 0.91821 0.86120 0.85743 0.94963 0.95076 0.92815 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.62 36.01 0.35 -1.02 15 2 C -0.11 -1.79 5.88 -104.59 -0.62 -2.40 15 3 C -0.11 -1.80 9.70 -39.59 -0.38 -2.18 15 4 C -0.12 -2.19 9.70 -39.58 -0.38 -2.57 15 5 C -0.03 -0.56 5.07 -104.63 -0.53 -1.09 15 6 C 0.05 1.20 5.10 -29.03 -0.15 1.05 15 7 C -0.51 -14.21 9.09 -34.44 -0.31 -14.52 15 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 15 9 C 0.06 1.65 5.46 -17.82 -0.10 1.56 15 10 N -0.89 -26.07 13.29 55.43 0.74 -25.34 15 11 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 15 12 H -0.27 -6.41 7.11 56.52 0.40 -6.00 15 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 14 H -0.28 -6.66 7.11 56.52 0.40 -6.25 15 15 C -0.11 -2.22 9.49 -39.55 -0.38 -2.60 15 16 C -0.03 -0.58 6.32 -39.49 -0.25 -0.83 15 17 Cl -0.09 -1.39 27.30 -51.86 -1.42 -2.81 15 18 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 19 H 0.07 0.83 6.90 -51.93 -0.36 0.47 15 20 H 0.06 0.69 8.09 -51.93 -0.42 0.27 15 21 H 0.12 1.57 8.06 -52.48 -0.42 1.15 15 22 H 0.12 2.23 8.06 -52.49 -0.42 1.81 15 23 H 0.03 0.84 8.09 -51.93 -0.42 0.42 15 24 H 0.03 0.82 8.08 -51.93 -0.42 0.40 15 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 26 H 0.13 2.53 8.06 -52.49 -0.42 2.10 15 LS Contribution 246.39 15.07 3.71 3.71 Total: -1.00 -28.61 246.39 -7.59 -36.20 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -2.85 Total: -3.52 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -2.75 Total: -24.60 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.74 Total: -25.34 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.42 Total: -2.81 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.61 -7.59 -36.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036203808.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.200 kcal (2) G-P(sol) polarization free energy of solvation -28.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds