Wall clock time and date at job start Mon Mar 30 2020 02:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38227 * 120.00771 * 2 1 4 4 C 1.38221 * 120.01685 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.02231 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99358 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 90.00024 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48496 * 109.47341 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46983 * 120.00379 * 11 9 7 14 14 H 1.48503 * 109.47491 * 240.00192 * 11 9 7 15 15 C 1.38190 * 120.01626 * 0.23507 * 5 4 3 16 16 C 1.38332 * 120.00167 * 179.97438 * 2 1 3 17 17 Cl 1.73598 * 120.01937 * 0.04545 * 16 2 1 18 18 H 1.09000 * 109.47335 * 90.00337 * 1 2 3 19 19 H 1.09001 * 109.46941 * 210.00457 * 1 2 3 20 20 H 1.09002 * 109.46766 * 329.99771 * 1 2 3 21 21 H 1.08006 * 119.99267 * 359.95686 * 3 2 1 22 22 H 1.07997 * 119.98762 * 179.97438 * 4 3 2 23 23 H 1.09004 * 109.47210 * 330.00318 * 6 5 4 24 24 H 1.08994 * 109.47551 * 209.99970 * 6 5 4 25 25 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 26 26 H 1.08002 * 120.01459 * 179.74443 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2725 0.0002 0.0005 6 6 5.7795 0.0012 0.0005 7 6 6.2818 0.0016 1.4214 8 1 5.5800 0.0007 2.2423 9 6 7.6374 -0.0033 1.6734 10 7 8.4920 -0.0026 0.6738 11 14 8.2599 -0.0107 3.4345 12 1 7.1049 -0.0107 4.3679 13 1 9.0813 -1.2264 3.6641 14 1 9.0885 1.1986 3.6718 15 6 3.5826 -1.1971 -0.0049 16 6 2.1987 -1.1980 0.0005 17 17 1.3313 -2.7017 0.0000 18 1 -0.3634 -0.0001 -1.0276 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3633 0.8900 0.5139 21 1 1.6583 2.1324 -0.0007 22 1 4.1202 2.1327 0.0001 23 1 6.1423 0.8915 -0.5133 24 1 6.1435 -0.8884 -0.5132 25 1 9.4457 -0.0057 0.8511 26 1 4.1231 -2.1321 -0.0091 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036203808.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:37 Heat of formation + Delta-G solvation = -21.759108 kcal Electronic energy + Delta-G solvation = -11172.123647 eV Core-core repulsion = 9046.928878 eV Total energy + Delta-G solvation = -2125.194768 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 210.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.37928 -37.44069 -35.68876 -33.93700 -31.58989 -30.52064 -27.16775 -24.48888 -23.61705 -21.66849 -18.54619 -17.26324 -16.68322 -16.34492 -16.12778 -15.04484 -14.63677 -14.41475 -13.98325 -13.65096 -13.24103 -13.02004 -12.94251 -12.56838 -12.45202 -12.26748 -12.03443 -11.96418 -11.46020 -11.31198 -10.62912 -9.69142 -9.29472 -8.22361 -6.35726 0.31386 0.45666 1.19614 1.38937 1.39887 1.53123 2.38132 2.80341 3.08942 3.92203 3.94462 4.23301 4.40232 4.54584 4.74330 4.81495 4.86227 4.99863 5.24279 5.27569 5.34854 5.41884 5.53344 5.71760 5.94172 5.99553 6.16297 6.76691 7.33174 8.87231 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.043079 B = 0.007774 C = 0.007323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.810978 B = 3600.725903 C = 3822.725694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C -0.101 4.101 4 C -0.124 4.124 5 C -0.058 4.058 6 C 0.056 3.944 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.006 3.994 10 N -0.929 5.929 11 Si 0.965 3.035 12 H -0.266 1.266 13 H -0.277 1.277 14 H -0.274 1.274 15 C -0.126 4.126 16 C -0.041 4.041 17 Cl -0.070 7.070 18 H 0.083 0.917 19 H 0.069 0.931 20 H 0.088 0.912 21 H 0.162 0.838 22 H 0.126 0.874 23 H 0.011 0.989 24 H 0.003 0.997 25 H 0.266 0.734 26 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.845 0.352 -0.750 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.119 4.119 4 C -0.143 4.143 5 C -0.059 4.059 6 C 0.020 3.980 7 C -0.567 4.567 8 H 0.072 0.928 9 C -0.192 4.192 10 N -0.569 5.569 11 Si 0.790 3.210 12 H -0.190 1.190 13 H -0.203 1.203 14 H -0.200 1.200 15 C -0.145 4.145 16 C -0.067 4.067 17 Cl -0.041 7.041 18 H 0.102 0.898 19 H 0.088 0.912 20 H 0.106 0.894 21 H 0.179 0.821 22 H 0.144 0.856 23 H 0.029 0.971 24 H 0.021 0.979 25 H 0.075 0.925 26 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.754 0.209 -0.792 14.776 hybrid contribution 1.022 -0.371 0.622 1.253 sum -13.731 -0.162 -0.170 13.733 Atomic orbital electron populations 1.20843 0.88063 1.04020 1.03544 1.20035 0.98137 0.90729 1.01332 1.21258 0.93007 0.98215 0.99378 1.21298 0.94963 0.97630 1.00368 1.20339 0.96977 0.93141 0.95418 1.18114 0.87193 0.96213 0.96525 1.21385 0.91916 1.51120 0.92316 0.92788 1.25906 0.97054 0.94488 1.01764 1.70081 1.02606 1.51194 1.32997 0.85391 0.78360 0.78002 0.79282 1.18992 1.20265 1.19958 1.20903 0.92424 0.98501 1.02675 1.20859 0.91586 0.87280 1.06983 1.98307 1.76445 1.32353 1.97023 0.89798 0.91219 0.89354 0.82064 0.85560 0.97100 0.97861 0.92495 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 9.62 71.24 0.69 -1.52 15 2 C -0.10 -2.94 5.88 -19.84 -0.12 -3.06 15 3 C -0.10 -2.94 9.70 22.26 0.22 -2.73 15 4 C -0.12 -4.62 9.70 22.27 0.22 -4.41 15 5 C -0.06 -2.57 5.07 -19.87 -0.10 -2.68 15 6 C 0.06 3.02 5.10 29.10 0.15 3.17 15 7 C -0.53 -30.23 9.09 25.60 0.23 -30.00 15 8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 15 9 C 0.01 0.36 5.46 84.66 0.46 0.82 15 10 N -0.93 -55.75 13.29 21.45 0.28 -55.46 15 11 Si 0.97 44.22 29.54 68.60 2.03 46.24 15 12 H -0.27 -11.80 7.11 99.48 0.71 -11.10 15 13 H -0.28 -12.36 7.11 99.48 0.71 -11.66 15 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 15 C -0.13 -5.11 9.49 22.29 0.21 -4.90 15 16 C -0.04 -1.37 6.32 22.33 0.14 -1.23 15 17 Cl -0.07 -2.02 27.30 -2.72 -0.07 -2.10 15 18 H 0.08 1.48 8.14 -2.39 -0.02 1.47 15 19 H 0.07 1.42 6.90 -2.39 -0.02 1.40 15 20 H 0.09 1.42 8.09 -2.39 -0.02 1.40 15 21 H 0.16 3.40 8.06 -2.91 -0.02 3.38 15 22 H 0.13 4.52 8.06 -2.91 -0.02 4.50 15 23 H 0.01 0.60 8.09 -2.38 -0.02 0.58 15 24 H 0.00 0.18 8.08 -2.39 -0.02 0.16 15 25 H 0.27 14.91 8.31 -92.70 -0.77 14.14 15 26 H 0.12 4.81 8.06 -2.91 -0.02 4.78 15 Total: -1.00 -62.64 246.39 5.50 -57.15 By element: Atomic # 1 Polarization: -0.47 SS G_CDS: 1.16 Total: 0.69 kcal Atomic # 6 Polarization: -48.62 SS G_CDS: 2.10 Total: -46.53 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.28 Total: -55.46 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.07 Total: -2.10 kcal Total: -62.64 5.50 -57.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036203808.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.390 kcal (2) G-P(sol) polarization free energy of solvation -62.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds