Wall clock time and date at job start Mon Mar 30 2020 02:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37015 * 122.44027 * 2 1 4 4 C 1.37526 * 113.23203 * 180.25213 * 3 2 1 5 5 C 1.46531 * 125.47167 * 179.71921 * 4 3 2 6 6 O 1.22060 * 119.99874 * 359.97438 * 5 4 3 7 7 C 1.41474 * 120.00124 * 179.97438 * 5 4 3 8 8 H 1.07997 * 119.99715 * 353.66521 * 7 5 4 9 9 C 1.40367 * 120.00055 * 173.65715 * 7 5 4 10 10 N 1.30518 * 119.99964 * 6.22965 * 9 7 5 11 11 Si 1.86792 * 120.00241 * 186.22969 * 9 7 5 12 12 H 1.48504 * 109.47227 * 94.98708 * 11 9 7 13 13 H 1.48501 * 109.47623 * 214.98592 * 11 9 7 14 14 H 1.48500 * 109.47184 * 334.98862 * 11 9 7 15 15 S 1.75831 * 109.05574 * 359.60378 * 4 3 2 16 16 C 1.34425 * 122.44032 * 179.97438 * 2 1 3 17 17 C 1.50694 * 124.50297 * 359.97438 * 16 2 1 18 18 H 1.08994 * 109.47423 * 90.02561 * 1 2 3 19 19 H 1.09006 * 109.46526 * 210.02398 * 1 2 3 20 20 H 1.09001 * 109.46845 * 330.01676 * 1 2 3 21 21 H 1.07995 * 123.38157 * 359.97438 * 3 2 1 22 22 H 0.96998 * 119.99989 * 179.97438 * 10 9 7 23 23 H 1.09004 * 109.47418 * 90.00450 * 17 16 2 24 24 H 1.08997 * 109.47743 * 210.00460 * 17 16 2 25 25 H 1.09002 * 109.47674 * 330.00907 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2419 1.1563 0.0000 4 6 3.5995 0.9363 -0.0056 5 6 4.6298 1.9782 -0.0128 6 8 4.3072 3.1554 -0.0147 7 6 5.9983 1.6197 -0.0175 8 1 6.2855 0.5839 0.0874 9 6 6.9828 2.6102 -0.1587 10 7 6.6444 3.8707 -0.1634 11 14 8.7773 2.1244 -0.3398 12 1 9.1316 2.0670 -1.7808 13 1 9.6334 3.1291 0.3407 14 1 8.9938 0.7908 0.2766 15 16 3.9002 -0.7961 0.0007 16 6 2.2281 -1.1345 0.0005 17 6 1.6379 -2.5210 0.0017 18 1 -0.3634 -0.0005 -1.0276 19 1 -0.3632 -0.8898 0.5142 20 1 -0.3633 0.8902 0.5136 21 1 1.7996 2.1416 -0.0004 22 1 7.3247 4.5552 -0.2606 23 1 1.4952 -2.8562 -1.0257 24 1 2.3145 -3.2036 0.5158 25 1 0.6768 -2.5065 0.5157 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083631506.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:46 Heat of formation + Delta-G solvation = -30.096286 kcal Electronic energy + Delta-G solvation = -11259.655933 eV Core-core repulsion = 9136.143344 eV Total energy + Delta-G solvation = -2123.512589 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 210.046 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.92214 -36.33013 -32.77470 -31.31694 -29.15825 -27.43054 -24.81017 -22.60990 -19.81045 -17.58577 -17.10980 -15.74795 -15.18102 -14.17227 -14.06296 -13.31100 -12.98311 -12.60791 -12.47395 -12.26682 -12.05960 -11.56489 -11.25414 -11.17273 -10.91706 -10.68442 -10.63558 -10.36367 -9.86609 -9.03096 -7.69763 -7.60993 -7.52785 -6.40556 -4.98783 1.52069 2.45170 2.91244 3.00387 3.10069 3.14340 3.26526 3.96492 4.38417 5.33074 5.50056 5.54581 5.64958 5.70544 5.81819 5.93894 6.06223 6.16117 6.38047 6.53822 6.82976 7.13070 7.15972 7.29786 7.93977 8.70596 8.73980 10.22133 10.43256 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.053062 B = 0.009224 C = 0.007910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.562415 B = 3034.976916 C = 3539.024764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.110 4.110 3 C -0.131 4.131 4 C -0.189 4.189 5 C 0.410 3.590 6 O -0.535 6.535 7 C -0.513 4.513 8 H 0.073 0.927 9 C 0.080 3.920 10 N -0.731 5.731 11 Si 0.908 3.092 12 H -0.268 1.268 13 H -0.275 1.275 14 H -0.259 1.259 15 S 0.176 5.824 16 C -0.264 4.264 17 C -0.070 4.070 18 H 0.061 0.939 19 H 0.059 0.941 20 H 0.061 0.939 21 H 0.138 0.862 22 H 0.276 0.724 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.976 -9.625 -0.094 10.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C -0.161 4.161 4 C -0.308 4.308 5 C 0.305 3.695 6 O -0.425 6.425 7 C -0.545 4.545 8 H 0.092 0.908 9 C -0.144 4.144 10 N -0.359 5.359 11 Si 0.732 3.268 12 H -0.193 1.193 13 H -0.200 1.200 14 H -0.183 1.183 15 S 0.444 5.556 16 C -0.382 4.382 17 C -0.129 4.129 18 H 0.080 0.920 19 H 0.078 0.922 20 H 0.080 0.920 21 H 0.155 0.845 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.825 -9.793 -0.093 10.514 hybrid contribution -0.476 0.573 -0.122 0.755 sum -4.301 -9.220 -0.215 10.176 Atomic orbital electron populations 1.20442 0.91026 1.01804 1.01416 1.18590 0.96601 0.91920 1.05282 1.20589 0.92155 0.98629 1.04695 1.26899 0.99534 0.97432 1.06970 1.17277 0.86680 0.85992 0.79518 1.90594 1.83624 1.18588 1.49698 1.20846 0.92119 0.94850 1.46707 0.90842 1.25983 1.01306 0.94306 0.92769 1.69951 1.35300 1.00713 1.29959 0.86321 0.81427 0.79741 0.79349 1.19269 1.19977 1.18286 1.82789 1.01723 1.01974 1.69082 1.23931 0.99750 0.99157 1.15402 1.20171 1.00166 0.90835 1.01682 0.92000 0.92226 0.92045 0.84466 0.91287 0.91773 0.92122 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.26 9.85 36.00 0.35 -0.90 15 2 C -0.11 -2.05 5.79 -106.41 -0.62 -2.67 15 3 C -0.13 -2.93 9.82 -40.28 -0.40 -3.32 15 4 C -0.19 -4.65 6.43 -36.50 -0.23 -4.89 15 5 C 0.41 11.98 6.88 -35.01 -0.24 11.74 15 6 O -0.53 -17.45 15.42 4.86 0.07 -17.38 15 7 C -0.51 -14.36 9.00 -37.55 -0.34 -14.69 15 8 H 0.07 1.89 7.12 -52.49 -0.37 1.51 15 9 C 0.08 2.17 5.49 -17.31 -0.10 2.08 15 10 N -0.73 -21.08 11.75 55.57 0.65 -20.42 15 11 Si 0.91 19.28 29.57 -169.99 -5.03 14.26 15 12 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 13 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 14 H -0.26 -5.32 7.11 56.52 0.40 -4.92 15 15 S 0.18 3.51 21.97 -107.50 -2.36 1.15 15 16 C -0.26 -4.66 6.29 -35.66 -0.22 -4.89 15 17 C -0.07 -0.92 9.99 36.00 0.36 -0.56 15 18 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 19 H 0.06 0.73 6.55 -51.93 -0.34 0.39 15 20 H 0.06 0.83 8.13 -51.93 -0.42 0.41 15 21 H 0.14 3.08 8.06 -52.49 -0.42 2.66 15 22 H 0.28 7.08 8.29 -40.82 -0.34 6.74 15 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 15 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 25 H 0.07 0.78 6.58 -51.93 -0.34 0.44 15 LS Contribution 238.70 15.07 3.60 3.60 Total: -1.00 -32.25 238.70 -6.80 -39.04 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -2.30 Total: -2.14 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -1.43 Total: -18.11 kcal Atomic # 7 Polarization: -21.08 SS G_CDS: 0.65 Total: -20.42 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.07 Total: -17.38 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.26 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -2.36 Total: 1.15 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -32.25 -6.80 -39.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083631506.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.945 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds