Wall clock time and date at job start Mon Mar 30 2020 02:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30697 * 1 3 3 Si 1.86805 * 120.00073 * 2 1 4 4 H 1.48498 * 109.46690 * 85.01842 * 3 2 1 5 5 H 1.48497 * 109.47336 * 205.01644 * 3 2 1 6 6 H 1.48493 * 109.47027 * 325.02240 * 3 2 1 7 7 C 1.40250 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00273 * 187.85654 * 7 2 1 9 9 C 1.39915 * 119.99995 * 7.84954 * 7 2 1 10 10 N 1.31863 * 125.55530 * 187.84652 * 9 7 2 11 11 C 1.30453 * 115.68586 * 179.97438 * 10 9 7 12 12 C 1.50707 * 122.09731 * 179.97438 * 11 10 9 13 13 N 1.46900 * 115.54590 * 214.44247 * 12 11 10 14 14 C 1.52996 * 117.50100 * 68.77020 * 12 11 10 15 15 C 1.52991 * 117.50185 * 0.10717 * 12 11 10 16 16 C 1.34851 * 115.79819 * 359.97438 * 11 10 9 17 17 S 1.71040 * 109.23369 * 359.76748 * 16 11 10 18 18 H 0.96997 * 120.00035 * 359.97438 * 1 2 3 19 19 H 1.00908 * 111.00120 * 325.57979 * 13 12 11 20 20 H 1.00898 * 111.00353 * 89.53736 * 13 12 11 21 21 H 1.08997 * 117.49819 * 0.02562 * 14 12 11 22 22 H 1.08999 * 117.49858 * 145.01502 * 14 12 11 23 23 H 1.09002 * 117.50520 * 214.98381 * 15 12 11 24 24 H 1.09002 * 117.49746 * 0.02562 * 15 12 11 25 25 H 1.08006 * 125.38464 * 179.97438 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.3832 2.1071 1.3948 5 1 3.5873 1.4121 -0.5920 6 1 1.4951 2.6200 -0.8026 7 6 2.0083 -1.2146 -0.0005 8 1 3.0806 -1.2190 0.1273 9 6 1.3186 -2.4205 -0.1666 10 7 1.8393 -3.6254 -0.0401 11 6 1.0184 -4.6198 -0.2375 12 6 1.4605 -6.0566 -0.1304 13 7 0.8087 -6.9907 -1.0581 14 6 1.8271 -6.5813 1.2592 15 6 2.9249 -6.3205 0.2249 16 6 -0.2507 -4.2813 -0.5432 17 16 -0.3882 -2.5767 -0.5702 18 1 -0.4850 0.8400 0.0004 19 1 -0.1512 -6.7264 -1.2224 20 1 1.3198 -7.0544 -1.9257 21 1 1.7481 -5.8875 2.0961 22 1 1.5849 -7.6197 1.4851 23 1 3.4048 -7.1875 -0.2292 24 1 3.5686 -5.4549 0.3818 25 1 -1.0541 -4.9767 -0.7368 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165372474.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:37 Heat of formation + Delta-G solvation = 21.736401 kcal Electronic energy + Delta-G solvation = -11438.935323 eV Core-core repulsion = 9349.963119 eV Total energy + Delta-G solvation = -2088.972204 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 210.052 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.28663 -37.65494 -35.85880 -32.24941 -30.96051 -28.21488 -25.04871 -23.27350 -22.31129 -19.74170 -19.39972 -17.67907 -16.97232 -16.75913 -16.11242 -15.33284 -14.99806 -14.56551 -14.18168 -13.78434 -13.46934 -13.01346 -12.42753 -12.31559 -12.03974 -11.94640 -11.79986 -11.24816 -10.94115 -9.89898 -9.82792 -9.77322 -9.12511 -8.89678 -6.72858 0.57609 1.38508 1.44688 1.52060 1.58035 1.98131 2.16543 2.19455 2.90788 3.22509 3.39493 3.84471 4.08813 4.38801 4.68161 4.76946 4.86541 4.93541 5.00883 5.30215 5.36101 5.62697 5.89220 6.14401 6.36941 6.39236 6.50099 7.77748 7.99176 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.054886 B = 0.009468 C = 0.008420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.026796 B = 2956.530941 C = 3324.466988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.023 3.977 3 Si 1.017 2.983 4 H -0.256 1.256 5 H -0.254 1.254 6 H -0.257 1.257 7 C -0.402 4.402 8 H 0.103 0.897 9 C 0.177 3.823 10 N -0.619 5.619 11 C 0.115 3.885 12 C 0.090 3.910 13 N -0.790 5.790 14 C -0.142 4.142 15 C -0.146 4.146 16 C -0.473 4.473 17 S 0.070 5.930 18 H 0.311 0.689 19 H 0.346 0.654 20 H 0.346 0.654 21 H 0.072 0.928 22 H 0.118 0.882 23 H 0.117 0.883 24 H 0.084 0.916 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.499 -1.572 -0.922 2.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.198 4.198 3 Si 0.834 3.166 4 H -0.180 1.180 5 H -0.177 1.177 6 H -0.181 1.181 7 C -0.445 4.445 8 H 0.121 0.879 9 C -0.075 4.075 10 N -0.343 5.343 11 C -0.027 4.027 12 C -0.006 4.006 13 N -0.319 5.319 14 C -0.181 4.181 15 C -0.184 4.184 16 C -0.616 4.616 17 S 0.328 5.672 18 H 0.124 0.876 19 H 0.160 0.840 20 H 0.160 0.840 21 H 0.090 0.910 22 H 0.136 0.864 23 H 0.135 0.865 24 H 0.102 0.898 25 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.070 -1.375 -0.461 1.802 hybrid contribution 0.013 0.466 -0.526 0.703 sum 1.083 -0.909 -0.987 1.724 Atomic orbital electron populations 1.69014 1.09204 1.32794 1.31312 1.27238 0.95904 1.05612 0.91046 0.84638 0.78711 0.73215 0.79990 1.18006 1.17734 1.18084 1.19364 0.96682 0.88558 1.39881 0.87921 1.24421 0.92203 0.94904 0.95933 1.67224 1.35669 0.97511 1.33871 1.19921 0.89471 0.95056 0.98230 1.19408 0.98192 0.85185 0.97820 1.58823 1.06782 1.48927 1.17344 1.23033 1.02212 1.01848 0.90993 1.22997 0.90081 1.02819 1.02484 1.25648 1.01732 1.02867 1.31365 1.83839 1.15517 0.96926 1.70939 0.87593 0.84009 0.84015 0.90954 0.86358 0.86483 0.89776 0.83709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.97 10.83 21.88 0.24 -37.74 15 2 C 0.02 1.06 5.48 85.35 0.47 1.53 15 3 Si 1.02 34.20 29.57 68.60 2.03 36.23 15 4 H -0.26 -8.23 7.11 99.48 0.71 -7.52 15 5 H -0.25 -8.42 7.11 99.48 0.71 -7.71 15 6 H -0.26 -8.02 7.11 99.48 0.71 -7.31 15 7 C -0.40 -21.10 9.44 23.17 0.22 -20.88 15 8 H 0.10 5.21 7.86 -2.91 -0.02 5.19 15 9 C 0.18 9.91 7.10 85.09 0.60 10.52 15 10 N -0.62 -34.03 9.88 -183.44 -1.81 -35.84 15 11 C 0.11 5.70 6.28 41.99 0.26 5.97 15 12 C 0.09 3.61 3.07 2.78 0.01 3.61 15 13 N -0.79 -26.08 9.74 -154.53 -1.51 -27.58 15 14 C -0.14 -5.12 10.17 30.62 0.31 -4.80 15 15 C -0.15 -5.24 10.00 30.61 0.31 -4.94 15 16 C -0.47 -23.33 10.28 67.04 0.69 -22.64 15 17 S 0.07 3.63 20.33 -56.49 -1.15 2.49 15 18 H 0.31 12.98 8.29 -92.71 -0.77 12.21 15 19 H 0.35 11.37 7.41 -89.69 -0.66 10.70 15 20 H 0.35 10.32 9.08 -89.70 -0.81 9.50 15 21 H 0.07 2.84 8.14 -2.39 -0.02 2.82 15 22 H 0.12 3.61 8.14 -2.39 -0.02 3.59 15 23 H 0.12 3.46 8.14 -2.39 -0.02 3.45 15 24 H 0.08 3.42 7.67 -2.39 -0.02 3.40 15 25 H 0.15 6.42 7.12 -2.91 -0.02 6.40 15 Total: -1.00 -59.79 235.34 0.42 -59.37 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -0.25 Total: 34.71 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: 2.87 Total: -31.63 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -3.08 Total: -101.16 kcal Atomic # 14 Polarization: 34.20 SS G_CDS: 2.03 Total: 36.23 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.15 Total: 2.49 kcal Total: -59.79 0.42 -59.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165372474.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.105 kcal (2) G-P(sol) polarization free energy of solvation -59.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds