Wall clock time and date at job start Mon Mar 30 2020 02:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48502 * 109.46997 * 270.00335 * 3 2 1 5 5 H 1.48496 * 109.47253 * 30.00007 * 3 2 1 6 6 H 1.48500 * 109.46776 * 150.00296 * 3 2 1 7 7 C 1.37870 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00391 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00221 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.85824 * 62.35693 * 9 7 2 11 11 C 1.54216 * 110.97542 * 298.55173 * 9 7 2 12 12 C 1.52113 * 104.84213 * 215.41049 * 11 9 7 13 13 S 1.76530 * 139.40097 * 197.36007 * 12 11 9 14 14 C 1.75575 * 91.08545 * 179.97438 * 13 12 11 15 15 C 1.32634 * 109.64912 * 0.02562 * 14 13 12 16 16 C 1.33823 * 110.67547 * 17.39213 * 12 11 9 17 17 C 1.52798 * 109.75483 * 0.09964 * 16 12 11 18 18 H 1.08994 * 110.32566 * 101.31090 * 17 16 12 19 19 O 1.42894 * 110.32915 * 223.52811 * 17 16 12 20 20 H 0.97005 * 119.99786 * 359.97438 * 1 2 3 21 21 H 1.09004 * 110.36627 * 96.57534 * 11 9 7 22 22 H 1.08998 * 110.36723 * 334.25799 * 11 9 7 23 23 H 1.08005 * 125.17880 * 179.97438 * 14 13 12 24 24 H 1.08000 * 122.18018 * 179.74321 * 15 14 13 25 25 H 0.96705 * 114.00138 * 295.62725 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6474 -2.5988 -0.9026 11 6 0.3795 -2.6335 1.2646 12 6 0.4256 -4.1131 1.6142 13 16 -0.4596 -5.2880 2.5902 14 6 0.6319 -6.5712 2.0956 15 6 1.5507 -6.0829 1.2731 16 6 1.4492 -4.7132 0.9955 17 6 2.2143 -3.6925 0.1544 18 1 3.1226 -3.3814 0.6704 19 8 2.5329 -4.2426 -1.1253 20 1 -0.4850 0.8401 0.0004 21 1 -0.6446 -2.3252 1.0542 22 1 0.7962 -2.0385 2.0773 23 1 0.5658 -7.6013 2.4135 24 1 2.3288 -6.6999 0.8485 25 1 3.1364 -4.9975 -1.0898 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259696848.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:28 Heat of formation + Delta-G solvation = -35.494575 kcal Electronic energy + Delta-G solvation = -11645.107128 eV Core-core repulsion = 9521.360451 eV Total energy + Delta-G solvation = -2123.746677 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 210.046 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.53358 -36.85328 -35.82849 -33.70989 -29.55694 -27.77884 -26.08952 -23.40519 -21.65792 -19.62405 -18.84461 -18.04387 -17.30152 -16.49894 -16.19402 -15.22353 -14.79341 -14.18647 -13.83589 -13.46781 -13.33847 -13.24644 -12.77711 -12.49679 -12.32500 -12.19482 -11.90270 -11.38189 -11.07945 -10.82460 -10.60647 -9.41474 -9.21805 -8.18922 -6.30659 0.16691 0.63090 1.16741 1.42952 1.43714 1.54359 1.78697 2.41265 3.12445 3.63611 3.74502 3.94059 4.31600 4.54264 4.61291 4.74375 4.89549 5.04644 5.15828 5.40608 5.54686 5.62994 5.68442 5.80083 6.21657 6.76129 7.03811 7.37720 8.91148 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.048174 B = 0.009781 C = 0.008550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.083609 B = 2861.970569 C = 3274.168717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.015 3.985 3 Si 0.963 3.037 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.060 3.940 10 H 0.005 0.995 11 C -0.012 4.012 12 C -0.213 4.213 13 S 0.106 5.894 14 C -0.209 4.209 15 C -0.118 4.118 16 C -0.176 4.176 17 C 0.176 3.824 18 H 0.064 0.936 19 O -0.571 6.571 20 H 0.264 0.736 21 H 0.046 0.954 22 H 0.058 0.942 23 H 0.205 0.795 24 H 0.165 0.835 25 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 -11.114 4.829 12.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.788 3.212 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.572 4.572 8 H 0.079 0.921 9 C 0.040 3.960 10 H 0.024 0.976 11 C -0.052 4.052 12 C -0.330 4.330 13 S 0.371 5.629 14 C -0.343 4.343 15 C -0.148 4.148 16 C -0.188 4.188 17 C 0.115 3.885 18 H 0.082 0.918 19 O -0.378 6.378 20 H 0.073 0.927 21 H 0.065 0.935 22 H 0.076 0.924 23 H 0.221 0.779 24 H 0.182 0.818 25 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.721 -10.504 5.609 11.930 hybrid contribution 1.600 0.620 -0.812 1.898 sum 2.321 -9.885 4.797 11.230 Atomic orbital electron populations 1.70098 1.07427 1.27761 1.50468 1.25822 0.95744 1.02759 0.94167 0.85471 0.78768 0.78612 0.78337 1.20137 1.20625 1.18779 1.21353 0.93153 0.90968 1.51773 0.92083 1.19303 0.92157 0.91782 0.92741 0.97647 1.20666 1.00158 0.86237 0.98131 1.26356 1.00880 1.01961 1.03809 1.83668 1.32609 0.98787 1.47860 1.25678 0.99695 1.03701 1.05223 1.19832 1.01912 0.92628 1.00442 1.21669 0.99468 0.95399 1.02311 1.21561 0.95860 0.89699 0.81361 0.91798 1.86595 1.69657 1.51784 1.29719 0.92667 0.93489 0.92378 0.77858 0.81790 0.76773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.93 12.35 21.45 0.26 -53.67 15 2 C 0.01 0.82 5.34 84.65 0.45 1.27 15 3 Si 0.96 43.65 29.54 68.60 2.03 45.68 15 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 15 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 15 7 C -0.53 -30.15 8.42 25.60 0.22 -29.93 15 8 H 0.06 3.35 7.67 -2.91 -0.02 3.32 15 9 C 0.06 3.22 2.74 -10.74 -0.03 3.19 15 10 H 0.01 0.33 8.12 -2.39 -0.02 0.31 15 11 C -0.01 -0.59 5.43 30.71 0.17 -0.42 15 12 C -0.21 -8.91 7.35 25.14 0.18 -8.72 15 13 S 0.11 3.36 23.34 -56.49 -1.32 2.04 15 14 C -0.21 -5.36 11.18 66.66 0.75 -4.61 15 15 C -0.12 -3.46 10.17 21.56 0.22 -3.24 15 16 C -0.18 -6.84 6.23 -19.73 -0.12 -6.97 15 17 C 0.18 7.72 3.79 30.91 0.12 7.84 15 18 H 0.06 2.75 7.81 -2.39 -0.02 2.74 15 19 O -0.57 -23.17 13.37 -148.98 -1.99 -25.16 15 20 H 0.26 14.64 8.31 -92.70 -0.77 13.87 15 21 H 0.05 2.52 7.90 -2.38 -0.02 2.50 15 22 H 0.06 3.01 7.89 -2.39 -0.02 2.99 15 23 H 0.20 3.41 8.06 -2.91 -0.02 3.39 15 24 H 0.16 3.59 8.06 -2.91 -0.02 3.57 15 25 H 0.38 10.66 9.12 -74.05 -0.68 9.99 15 Total: -1.00 -65.48 233.49 1.46 -64.02 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.53 Total: 8.69 kcal Atomic # 6 Polarization: -43.55 SS G_CDS: 1.95 Total: -41.60 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.26 Total: -53.67 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -1.99 Total: -25.16 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.32 Total: 2.04 kcal Total: -65.48 1.46 -64.02 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259696848.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.524 kcal (2) G-P(sol) polarization free energy of solvation -65.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds