Wall clock time and date at job start Mon Mar 30 2020 02:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00083 * 2 1 4 4 H 1.48502 * 109.46849 * 239.99301 * 3 2 1 5 5 H 1.48495 * 109.47384 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47163 * 119.99882 * 3 2 1 7 7 C 1.37881 * 119.99528 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99577 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47209 * 179.97438 * 9 7 2 11 11 C 1.33924 * 126.35976 * 85.02744 * 10 9 7 12 12 N 1.34068 * 108.30988 * 179.97438 * 11 10 9 13 13 C 1.31919 * 109.08594 * 359.97438 * 12 11 10 14 14 N 1.34887 * 109.25066 * 0.02562 * 13 12 11 15 15 C 1.45966 * 117.17098 * 179.97438 * 14 13 12 16 16 C 1.52855 * 112.47021 * 0.02562 * 15 14 13 17 17 S 1.76901 * 140.70471 * 179.97438 * 13 12 11 18 18 H 0.97002 * 120.00195 * 0.02562 * 1 2 3 19 19 H 1.09005 * 109.47383 * 59.99619 * 9 7 2 20 20 H 1.08997 * 109.47533 * 299.99495 * 9 7 2 21 21 H 1.07998 * 125.84872 * 359.71168 * 11 10 9 22 22 H 1.09005 * 108.88845 * 120.79105 * 15 14 13 23 23 H 1.08999 * 108.88649 * 239.20860 * 15 14 13 24 24 H 1.08991 * 110.48614 * 118.67947 * 16 15 14 25 25 H 1.09000 * 110.48142 * 241.18552 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2301 -3.6447 0.0005 11 6 2.8171 -4.1874 1.0750 12 7 3.6176 -5.1801 0.6612 13 6 3.5455 -5.2731 -0.6527 14 7 2.6930 -4.3374 -1.1187 15 6 2.4836 -4.2862 -2.5624 16 6 3.2988 -5.3421 -3.3087 17 16 4.2001 -6.2198 -1.9961 18 1 -0.4850 0.8400 -0.0004 19 1 0.6245 -2.5571 -0.8897 20 1 0.6240 -2.5568 0.8903 21 1 2.6738 -3.8758 2.0991 22 1 1.4256 -4.4449 -2.7713 23 1 2.7679 -3.2986 -2.9253 24 1 2.6392 -6.0262 -3.8425 25 1 3.9952 -4.8678 -4.0001 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260060643.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:49 Heat of formation + Delta-G solvation = 61.529662 kcal Electronic energy + Delta-G solvation = -11506.791093 eV Core-core repulsion = 9419.544454 eV Total energy + Delta-G solvation = -2087.246639 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 210.052 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.37498 -35.14051 -33.49565 -30.81175 -29.59727 -26.61419 -24.15865 -23.06665 -21.19593 -19.32836 -17.02789 -16.57076 -15.99611 -15.01214 -14.55379 -14.11377 -13.84454 -13.38513 -12.51044 -12.41846 -12.12970 -12.06435 -11.59733 -10.93869 -10.84107 -10.57974 -10.09064 -9.70766 -9.32468 -9.06031 -8.68708 -8.54794 -6.99442 -6.16470 -4.22802 1.27829 2.08429 2.49806 3.11873 3.24654 3.29306 3.32976 3.70637 4.21761 4.34579 4.58828 5.17112 5.18512 5.37410 5.46766 5.51979 6.10041 6.34655 6.54403 7.24361 7.33904 7.49042 7.51109 7.77387 8.13550 8.49340 8.81262 9.42365 10.91906 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.047261 B = 0.008602 C = 0.008144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.309204 B = 3254.169334 C = 3437.471800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.083 3.917 10 C 0.070 3.930 11 C -0.039 4.039 12 N -0.456 5.456 13 C 0.152 3.848 14 N -0.481 5.481 15 C 0.098 3.902 16 C -0.113 4.113 17 S -0.030 6.030 18 H 0.265 0.735 19 H 0.025 0.975 20 H 0.048 0.952 21 H 0.176 0.824 22 H 0.096 0.904 23 H 0.101 0.899 24 H 0.117 0.883 25 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.826 -7.967 -7.247 11.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.044 3.956 10 C -0.044 4.044 11 C -0.186 4.186 12 N -0.178 5.178 13 C -0.217 4.217 14 N -0.172 5.172 15 C -0.025 4.025 16 C -0.262 4.262 17 S 0.198 5.802 18 H 0.074 0.926 19 H 0.043 0.957 20 H 0.066 0.934 21 H 0.193 0.807 22 H 0.114 0.886 23 H 0.120 0.880 24 H 0.135 0.865 25 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.849 -9.195 -6.941 12.500 hybrid contribution -0.914 2.532 -0.410 2.723 sum 3.935 -6.663 -7.351 10.673 Atomic orbital electron populations 1.69932 1.06049 1.27258 1.49873 1.24990 0.94897 0.99329 0.94831 0.86540 0.79509 0.82479 0.78864 1.20263 1.21094 1.19906 1.20990 0.93104 0.89646 1.51938 0.92447 1.17914 0.91237 0.87493 0.98913 1.22607 1.01679 0.97212 0.82868 1.21838 1.00516 0.97261 0.98991 1.70319 1.22141 1.20220 1.05166 1.25102 1.02071 0.98898 0.95621 1.46713 1.36126 1.28170 1.06169 1.21384 1.01974 1.01067 0.78116 1.24302 1.02151 1.00087 0.99691 1.85620 1.57924 1.42963 0.93721 0.92558 0.95671 0.93367 0.80691 0.88599 0.88039 0.86476 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 13.29 55.43 0.74 -24.67 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 15 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 7 C -0.52 -14.16 9.09 -34.44 -0.31 -14.47 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 15 9 C 0.08 2.07 5.52 -29.04 -0.16 1.91 15 10 C 0.07 1.60 6.42 -80.60 -0.52 1.08 15 11 C -0.04 -0.86 11.73 -18.09 -0.21 -1.08 15 12 N -0.46 -10.17 11.32 -13.59 -0.15 -10.32 15 13 C 0.15 3.06 8.90 -89.32 -0.79 2.26 15 14 N -0.48 -9.59 3.39 -112.40 -0.38 -9.97 15 15 C 0.10 1.44 7.44 -4.40 -0.03 1.41 15 16 C -0.11 -1.21 7.37 37.08 0.27 -0.94 15 17 S -0.03 -0.45 23.24 -107.50 -2.50 -2.95 15 18 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 19 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 20 H 0.05 1.26 8.14 -51.93 -0.42 0.83 15 21 H 0.18 3.53 8.06 -52.49 -0.42 3.11 15 22 H 0.10 1.27 8.14 -51.93 -0.42 0.85 15 23 H 0.10 1.48 8.14 -51.93 -0.42 1.06 15 24 H 0.12 0.92 8.14 -51.93 -0.42 0.50 15 25 H 0.12 0.98 8.14 -51.93 -0.42 0.56 15 LS Contribution 236.98 15.07 3.57 3.57 Total: -1.00 -31.47 236.98 -8.10 -39.57 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: -2.50 Total: -3.02 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -1.85 Total: -8.23 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.20 Total: -44.96 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -2.50 Total: -2.95 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.47 -8.10 -39.57 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060643.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.098 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds