Wall clock time and date at job start Mon Mar 30 2020 02:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00081 * 2 1 4 4 H 1.48499 * 109.47253 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47219 * 300.00533 * 3 2 1 6 6 H 1.48501 * 109.46958 * 60.00223 * 3 2 1 7 7 C 1.37875 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00428 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99802 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.41447 * 299.16747 * 9 7 2 11 11 C 1.54223 * 110.36467 * 176.87420 * 9 7 2 12 12 C 1.54146 * 101.72606 * 214.67428 * 11 9 7 13 13 C 1.52804 * 105.04913 * 26.58602 * 12 11 9 14 14 C 1.40117 * 136.53635 * 162.48195 * 13 12 11 15 15 C 1.32624 * 115.63523 * 179.97438 * 14 13 12 16 16 S 1.75589 * 109.64877 * 0.02562 * 15 14 13 17 17 C 1.33824 * 109.75333 * 342.44922 * 13 12 11 18 18 H 0.96999 * 120.00177 * 359.97438 * 1 2 3 19 19 H 0.96702 * 113.99917 * 60.83639 * 10 9 7 20 20 H 1.08999 * 110.97400 * 332.78507 * 11 9 7 21 21 H 1.09000 * 110.97317 * 96.56630 * 11 9 7 22 22 H 1.09000 * 110.32151 * 145.47805 * 12 11 9 23 23 H 1.08996 * 110.32615 * 267.59374 * 12 11 9 24 24 H 1.08005 * 122.18560 * 359.95485 * 14 13 12 25 25 H 1.08005 * 125.17802 * 180.27650 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4370 -2.6047 1.1692 11 6 2.2329 -3.6858 -0.0800 12 6 1.4361 -4.6953 -0.9298 13 6 0.4947 -3.8429 -1.7795 14 6 -0.2697 -4.0211 -2.9402 15 6 -0.9657 -2.9641 -3.3367 16 16 -0.6908 -1.6276 -2.2316 17 6 0.3958 -2.6165 -1.2530 18 1 -0.4850 0.8400 0.0004 19 1 -0.2322 -1.9109 1.2466 20 1 3.1558 -3.3956 -0.5822 21 1 2.4398 -4.0880 0.9117 22 1 2.1094 -5.2671 -1.5684 23 1 0.8657 -5.3650 -0.2862 24 1 -0.2906 -4.9580 -3.4771 25 1 -1.6075 -2.9316 -4.2048 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260982665.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:03 Heat of formation + Delta-G solvation = -15.764064 kcal Electronic energy + Delta-G solvation = -12054.845611 eV Core-core repulsion = 9931.954514 eV Total energy + Delta-G solvation = -2122.891097 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 210.046 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.55267 -35.21536 -32.32446 -32.18775 -27.29294 -26.97575 -23.98277 -21.38993 -19.79181 -17.39888 -17.15235 -16.50857 -14.90367 -14.26859 -13.68964 -13.45088 -13.02467 -12.54899 -11.80751 -11.68992 -11.46924 -11.07982 -10.84710 -10.64698 -10.51166 -10.34450 -10.27104 -9.50934 -9.43638 -8.64740 -8.36524 -7.47457 -7.15768 -6.30501 -4.40776 2.20369 2.83207 3.17236 3.26307 3.30292 3.46703 3.69806 4.24082 4.98033 5.43780 5.79023 5.91722 6.00036 6.23409 6.25434 6.47927 6.57540 6.84280 6.94224 7.09889 7.25595 7.47685 7.56059 7.68128 8.01788 8.62586 9.25960 9.37813 10.72769 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.034590 B = 0.015792 C = 0.012503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.297016 B = 1772.655387 C = 2238.906303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.526 4.526 8 H 0.068 0.932 9 C 0.307 3.693 10 O -0.579 6.579 11 C -0.101 4.101 12 C -0.047 4.047 13 C -0.189 4.189 14 C -0.116 4.116 15 C -0.298 4.298 16 S 0.193 5.807 17 C -0.132 4.132 18 H 0.273 0.727 19 H 0.381 0.619 20 H 0.074 0.926 21 H 0.070 0.930 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.111 0.889 25 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.313 -3.397 -3.364 4.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.134 4.134 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.564 4.564 8 H 0.086 0.914 9 C 0.266 3.734 10 O -0.387 6.387 11 C -0.139 4.139 12 C -0.086 4.086 13 C -0.200 4.200 14 C -0.148 4.148 15 C -0.434 4.434 16 S 0.459 5.541 17 C -0.251 4.251 18 H 0.083 0.917 19 H 0.231 0.769 20 H 0.092 0.908 21 H 0.089 0.911 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.129 0.871 25 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.642 -2.266 -3.208 3.980 hybrid contribution 0.445 -0.050 -0.454 0.638 sum -0.197 -2.316 -3.663 4.338 Atomic orbital electron populations 1.69378 1.05937 1.27924 1.49850 1.25069 0.95058 0.99743 0.93545 0.86358 0.80187 0.82692 0.77868 1.19552 1.20609 1.20626 1.21887 0.94018 0.90652 1.49881 0.91417 1.17924 0.84735 0.92714 0.78041 1.86185 1.52106 1.55931 1.44494 1.22187 0.97557 0.95020 0.99179 1.20858 0.95407 0.96568 0.95766 1.20468 1.04550 0.96830 0.98136 1.19346 0.99490 0.98785 0.97144 1.25853 1.08796 1.01303 1.07398 1.84562 1.42464 1.11308 1.15742 1.26942 1.00066 0.94967 1.03108 0.91710 0.76941 0.90763 0.91096 0.92601 0.91797 0.87067 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.96 9.00 55.43 0.50 -22.46 15 2 C 0.07 1.74 5.20 -17.82 -0.09 1.64 15 3 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 15 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 7 C -0.53 -14.00 8.24 -34.44 -0.28 -14.29 15 8 H 0.07 1.78 7.64 -52.49 -0.40 1.38 15 9 C 0.31 7.76 0.91 -91.58 -0.08 7.68 15 10 O -0.58 -15.19 13.05 -35.23 -0.46 -15.65 15 11 C -0.10 -2.17 6.32 -25.49 -0.16 -2.34 15 12 C -0.05 -0.93 6.81 -26.23 -0.18 -1.11 15 13 C -0.19 -4.21 6.54 -104.42 -0.68 -4.89 15 14 C -0.12 -2.34 10.17 -40.78 -0.41 -2.76 15 15 C -0.30 -5.91 11.18 28.83 0.32 -5.58 15 16 S 0.19 4.37 21.03 -107.50 -2.26 2.11 15 17 C -0.13 -3.23 5.76 -35.16 -0.20 -3.43 15 18 H 0.27 6.72 8.31 -40.82 -0.34 6.38 15 19 H 0.38 10.10 7.35 45.56 0.33 10.43 15 20 H 0.07 1.53 7.81 -51.93 -0.41 1.13 15 21 H 0.07 1.45 8.11 -51.93 -0.42 1.03 15 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 24 H 0.11 1.93 8.06 -52.48 -0.42 1.50 15 25 H 0.14 2.39 8.06 -52.48 -0.42 1.96 15 LS Contribution 226.68 15.07 3.42 3.42 Total: -1.00 -27.34 226.68 -7.32 -34.67 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -1.72 Total: 7.63 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: -1.78 Total: -25.07 kcal Atomic # 7 Polarization: -22.96 SS G_CDS: 0.50 Total: -22.46 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.46 Total: -15.65 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -2.26 Total: 2.11 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -27.34 -7.32 -34.67 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260982665.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.902 kcal (2) G-P(sol) polarization free energy of solvation -27.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds