Wall clock time and date at job start Mon Mar 30 2020 02:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00081 * 2 1 4 4 H 1.48499 * 109.47253 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47219 * 300.00533 * 3 2 1 6 6 H 1.48501 * 109.46958 * 60.00223 * 3 2 1 7 7 C 1.37875 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00428 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99802 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.41447 * 299.16747 * 9 7 2 11 11 C 1.54223 * 110.36467 * 176.87420 * 9 7 2 12 12 C 1.54146 * 101.72606 * 214.67428 * 11 9 7 13 13 C 1.52804 * 105.04913 * 26.58602 * 12 11 9 14 14 C 1.40117 * 136.53635 * 162.48195 * 13 12 11 15 15 C 1.32624 * 115.63523 * 179.97438 * 14 13 12 16 16 S 1.75589 * 109.64877 * 0.02562 * 15 14 13 17 17 C 1.33824 * 109.75333 * 342.44922 * 13 12 11 18 18 H 0.96999 * 120.00177 * 359.97438 * 1 2 3 19 19 H 0.96702 * 113.99917 * 60.83639 * 10 9 7 20 20 H 1.08999 * 110.97400 * 332.78507 * 11 9 7 21 21 H 1.09000 * 110.97317 * 96.56630 * 11 9 7 22 22 H 1.09000 * 110.32151 * 145.47805 * 12 11 9 23 23 H 1.08996 * 110.32615 * 267.59374 * 12 11 9 24 24 H 1.08005 * 122.18560 * 359.95485 * 14 13 12 25 25 H 1.08005 * 125.17802 * 180.27650 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4370 -2.6047 1.1692 11 6 2.2329 -3.6858 -0.0800 12 6 1.4361 -4.6953 -0.9298 13 6 0.4947 -3.8429 -1.7795 14 6 -0.2697 -4.0211 -2.9402 15 6 -0.9657 -2.9641 -3.3367 16 16 -0.6908 -1.6276 -2.2316 17 6 0.3958 -2.6165 -1.2530 18 1 -0.4850 0.8400 0.0004 19 1 -0.2322 -1.9109 1.2466 20 1 3.1558 -3.3956 -0.5822 21 1 2.4398 -4.0880 0.9117 22 1 2.1094 -5.2671 -1.5684 23 1 0.8657 -5.3650 -0.2862 24 1 -0.2906 -4.9580 -3.4771 25 1 -1.6075 -2.9316 -4.2048 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260982665.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:02 Heat of formation + Delta-G solvation = -32.873538 kcal Electronic energy + Delta-G solvation = -12055.587534 eV Core-core repulsion = 9931.954514 eV Total energy + Delta-G solvation = -2123.633020 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 210.046 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.27438 -37.02685 -34.24208 -33.96961 -29.13883 -28.64964 -25.80669 -23.02136 -21.55012 -19.17711 -18.99484 -18.28364 -16.82200 -16.04393 -15.32516 -15.13484 -14.72338 -14.41600 -13.57737 -13.36357 -13.33158 -12.85958 -12.53422 -12.44049 -12.28885 -12.16907 -11.87271 -11.28932 -11.17913 -10.55506 -10.31191 -9.17516 -8.87601 -8.23036 -6.41116 0.53241 1.15725 1.37314 1.41117 1.50739 1.79690 2.06089 2.36312 3.01914 3.80024 4.12253 4.19115 4.43115 4.60614 4.74539 4.87340 4.98254 5.19075 5.26075 5.44498 5.46787 5.70736 5.83878 5.87967 6.12240 6.63555 7.26744 7.34918 8.77679 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.034590 B = 0.015792 C = 0.012503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.297016 B = 1772.655387 C = 2238.906303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.033 3.967 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.556 4.556 8 H 0.059 0.941 9 C 0.289 3.711 10 O -0.589 6.589 11 C -0.101 4.101 12 C -0.042 4.042 13 C -0.185 4.185 14 C -0.125 4.125 15 C -0.276 4.276 16 S 0.148 5.852 17 C -0.176 4.176 18 H 0.273 0.727 19 H 0.373 0.627 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.088 0.912 23 H 0.073 0.927 24 H 0.149 0.851 25 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.284 -4.333 -4.604 6.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.168 4.168 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.594 4.594 8 H 0.077 0.923 9 C 0.248 3.752 10 O -0.397 6.397 11 C -0.140 4.140 12 C -0.081 4.081 13 C -0.197 4.197 14 C -0.155 4.155 15 C -0.411 4.411 16 S 0.414 5.586 17 C -0.295 4.295 18 H 0.083 0.917 19 H 0.222 0.778 20 H 0.096 0.904 21 H 0.094 0.906 22 H 0.107 0.893 23 H 0.091 0.909 24 H 0.166 0.834 25 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.611 -3.215 -4.446 5.521 hybrid contribution 0.397 0.199 -0.102 0.456 sum -0.214 -3.015 -4.548 5.461 Atomic orbital electron populations 1.69490 1.06551 1.28363 1.49448 1.25668 0.95848 1.02094 0.93162 0.85542 0.79034 0.79523 0.77836 1.19600 1.20346 1.20246 1.22089 0.93815 0.92133 1.51391 0.92314 1.18225 0.85324 0.93555 0.78062 1.86163 1.52099 1.55594 1.45807 1.22206 0.97243 0.94427 1.00078 1.20891 0.95412 0.96024 0.95773 1.21016 1.03996 0.96297 0.98396 1.19688 0.98821 1.00395 0.96643 1.26154 1.08387 0.99405 1.07156 1.84511 1.43201 1.13538 1.17316 1.26908 1.02214 0.96453 1.03888 0.91698 0.77788 0.90397 0.90557 0.89326 0.90857 0.83375 0.80245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.97 9.00 21.45 0.19 -46.78 15 2 C 0.03 1.70 5.20 84.65 0.44 2.15 15 3 Si 0.96 42.05 29.54 68.60 2.03 44.07 15 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 15 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 6 H -0.28 -11.93 7.11 99.48 0.71 -11.23 15 7 C -0.56 -30.03 8.24 25.60 0.21 -29.82 15 8 H 0.06 3.15 7.64 -2.91 -0.02 3.13 15 9 C 0.29 14.68 0.91 -11.42 -0.01 14.67 15 10 O -0.59 -31.46 13.05 -148.98 -1.94 -33.40 15 11 C -0.10 -4.27 6.32 31.40 0.20 -4.07 15 12 C -0.04 -1.56 6.81 30.92 0.21 -1.35 15 13 C -0.19 -7.85 6.54 -19.73 -0.13 -7.98 15 14 C -0.12 -4.60 10.17 21.56 0.22 -4.38 15 15 C -0.28 -10.08 11.18 66.66 0.75 -9.34 15 16 S 0.15 6.64 21.03 -56.49 -1.19 5.45 15 17 C -0.18 -8.54 5.76 25.14 0.14 -8.40 15 18 H 0.27 13.63 8.31 -92.71 -0.77 12.86 15 19 H 0.37 20.44 7.35 -74.06 -0.54 19.89 15 20 H 0.08 3.17 7.81 -2.39 -0.02 3.15 15 21 H 0.08 3.07 8.11 -2.39 -0.02 3.05 15 22 H 0.09 2.71 8.14 -2.39 -0.02 2.69 15 23 H 0.07 2.59 8.14 -2.39 -0.02 2.57 15 24 H 0.15 4.37 8.06 -2.91 -0.02 4.34 15 25 H 0.18 5.18 8.06 -2.91 -0.02 5.16 15 Total: -1.00 -57.80 226.68 1.78 -56.02 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.66 Total: 23.16 kcal Atomic # 6 Polarization: -50.56 SS G_CDS: 2.03 Total: -48.53 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.19 Total: -46.78 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.94 Total: -33.40 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: 6.64 SS G_CDS: -1.19 Total: 5.45 kcal Total: -57.80 1.78 -56.02 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260982665.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.144 kcal (2) G-P(sol) polarization free energy of solvation -57.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds