Wall clock time and date at job start Mon Mar 30 2020 02:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30621 * 1 3 3 Si 1.86803 * 119.99864 * 2 1 4 4 H 1.48504 * 109.46978 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47263 * 119.99612 * 3 2 1 6 6 H 1.48494 * 109.46886 * 240.00009 * 3 2 1 7 7 C 1.40305 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99590 * 154.64157 * 7 2 1 9 9 C 1.40971 * 120.00098 * 334.64584 * 7 2 1 10 10 C 1.40911 * 120.15032 * 334.40380 * 9 7 2 11 11 C 1.36212 * 120.02345 * 179.73249 * 10 9 7 12 12 C 1.39886 * 120.33400 * 0.52329 * 11 10 9 13 Xx 1.56997 * 119.85143 * 179.73343 * 12 11 10 14 13 O 1.42000 * 119.99845 * 180.02562 * 13 12 11 15 14 O 1.41999 * 120.00136 * 0.02562 * 13 12 11 16 15 C 1.39687 * 120.29440 * 359.75489 * 12 11 10 17 16 C 1.37703 * 119.97327 * 359.97438 * 16 12 11 18 17 F 1.35103 * 120.16644 * 179.97438 * 17 16 12 19 18 H 0.97000 * 119.99555 * 174.19520 * 1 2 3 20 19 H 1.07996 * 119.98990 * 359.97438 * 10 9 7 21 20 H 1.07999 * 119.83675 * 180.25445 * 11 10 9 22 21 H 0.96694 * 114.00199 * 180.02562 * 14 13 12 23 22 H 0.96697 * 114.00036 * 180.02562 * 15 13 12 24 23 H 1.08009 * 120.01444 * 180.02562 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 1.2751 2.7465 -0.0006 5 1 3.0939 1.6965 1.2125 6 1 3.0939 1.6964 -1.2125 7 6 2.0077 -1.2151 0.0005 8 1 3.0097 -1.2603 -0.4000 9 6 1.4047 -2.3769 0.5238 10 6 0.3914 -2.2713 1.4972 11 6 -0.1933 -3.3954 1.9971 12 6 0.2143 -4.6591 1.5572 13 8 -0.0512 -7.2319 1.7016 14 8 -1.4874 -5.8283 3.1217 15 6 1.2217 -4.7799 0.5970 16 6 1.8173 -3.6515 0.0792 17 9 2.7923 -3.7638 -0.8493 18 1 -0.4849 -0.8358 -0.0850 19 1 0.0754 -1.2986 1.8442 20 1 -0.9726 -3.3108 2.7401 21 1 -0.5254 -7.9634 2.1201 22 1 -1.8430 -6.6752 3.4241 23 1 1.5326 -5.7579 0.2602 There are 35 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 35 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719000316.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:40 Heat of formation + Delta-G solvation = 73.626485 kcal Electronic energy + Delta-G solvation = -11884.738658 eV Core-core repulsion = 9314.081051 eV Total energy + Delta-G solvation = -2570.657607 eV No. of doubly occupied orbitals = 35 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 199.056 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.83387 -39.02467 -35.79618 -31.01107 -30.55189 -29.09655 -28.60507 -26.56415 -22.45333 -21.99361 -19.74381 -16.71595 -16.37993 -16.18199 -15.54361 -15.02994 -14.47897 -13.84105 -13.23054 -12.71478 -12.57247 -11.97433 -11.82114 -11.49397 -11.23419 -11.21166 -11.16364 -10.64021 -9.38071 -9.01799 -8.68732 -7.23643 -7.16194 -6.80453 -5.81069 -3.63806 -0.08787 1.30858 1.44138 2.12446 2.23765 2.46428 2.79765 2.95241 3.88894 4.21533 4.88905 5.06858 5.10961 5.39571 5.55572 5.63687 5.85532 6.05868 6.20755 6.30618 6.54264 6.90531 7.08265 7.92907 9.95763 10.09696 Molecular weight = 199.06amu Principal moments of inertia in cm(-1) A = 0.047721 B = 0.009701 C = 0.008303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.598201 B = 2885.748395 C = 3371.588469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.041 4.041 3 Si 1.080 2.920 4 H -0.250 1.250 5 H -0.254 1.254 6 H -0.254 1.254 7 C -0.171 4.171 8 H 0.135 0.865 9 C -0.092 4.092 10 C -0.090 4.090 11 C -0.121 4.121 12 C 0.254 3.746 13 O -0.868 6.868 14 O -0.869 6.869 15 C -0.159 4.159 16 C 0.116 3.884 17 F -0.124 7.124 18 H 0.327 0.673 19 H 0.147 0.853 20 H 0.154 0.846 21 H 0.274 0.726 22 H 0.273 0.727 23 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.399 16.746 -6.206 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.260 5.260 2 C -0.265 4.265 3 Si 0.894 3.106 4 H -0.172 1.172 5 H -0.178 1.178 6 H -0.178 1.178 7 C -0.191 4.191 8 H 0.152 0.848 9 C -0.095 4.095 10 C -0.108 4.108 11 C -0.139 4.139 12 C 0.231 3.769 13 O -0.685 6.685 14 O -0.686 6.686 15 C -0.178 4.178 16 C 0.096 3.904 17 F -0.103 7.103 18 H 0.144 0.856 19 H 0.165 0.835 20 H 0.172 0.828 21 H 0.104 0.896 22 H 0.103 0.897 23 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.798 19.396 -6.700 22.327 hybrid contribution -0.544 -3.345 0.400 3.412 sum 8.254 16.051 -6.300 19.117 Atomic orbital electron populations 1.70444 1.08012 1.37411 1.10126 1.28721 0.95866 1.06418 0.95514 0.83397 0.76114 0.70818 0.80282 1.17247 1.17840 1.17753 1.23153 1.00874 0.92299 1.02777 0.84773 1.18144 0.99704 0.91900 0.99776 1.21290 0.95211 0.98207 0.96081 1.21160 1.02095 0.88388 1.02303 1.31242 0.82886 0.78546 0.84188 1.93502 1.70343 1.30154 1.74514 1.93507 1.70643 1.29504 1.74987 1.21288 0.98158 0.99389 0.99006 1.17797 0.89745 0.92088 0.90743 1.91480 1.59431 1.96659 1.62681 0.85600 0.83519 0.82809 0.89593 0.89669 0.82233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.63 -8.87 12.30 55.57 0.68 -8.18 14 2 C -0.04 -0.51 4.94 -17.29 -0.09 -0.60 14 3 Si 1.08 9.70 30.01 -169.99 -5.10 4.60 14 4 H -0.25 -2.42 7.11 56.52 0.40 -2.02 14 5 H -0.25 -2.24 7.11 56.52 0.40 -1.84 14 6 H -0.25 -2.11 7.11 56.52 0.40 -1.71 14 7 C -0.17 -2.29 8.71 -37.77 -0.33 -2.62 14 8 H 0.13 1.50 7.80 -52.49 -0.41 1.09 14 9 C -0.09 -1.51 5.31 -106.74 -0.57 -2.08 14 10 C -0.09 -1.53 7.88 -39.30 -0.31 -1.84 14 11 C -0.12 -2.60 9.67 -39.69 -0.38 -2.98 14 12 C 0.25 6.64 9.81 -38.42 -0.38 6.26 14 13 O -0.87 -31.78 17.22 -57.73 -0.99 -32.77 14 14 O -0.87 -31.64 17.22 -57.73 -0.99 -32.64 14 15 C -0.16 -3.57 9.71 -39.24 -0.38 -3.95 14 16 C 0.12 2.13 7.30 -38.67 -0.28 1.84 14 17 F -0.12 -2.08 16.71 2.25 0.04 -2.04 14 18 H 0.33 4.83 6.69 -40.82 -0.27 4.55 14 19 H 0.15 2.17 6.48 -52.49 -0.34 1.83 14 20 H 0.15 3.41 7.74 -52.49 -0.41 3.00 14 21 H 0.27 9.56 8.90 45.56 0.41 9.97 14 22 H 0.27 9.51 8.90 45.56 0.41 9.92 14 23 H 0.16 3.75 7.75 -52.48 -0.41 3.34 14 LS Contribution 232.37 15.07 3.50 3.50 Total: -1.00 -39.97 232.37 -5.40 -45.37 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.18 Total: 28.13 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -2.71 Total: -5.97 kcal Atomic # 7 Polarization: -8.87 SS G_CDS: 0.68 Total: -8.18 kcal Atomic # 8 Polarization: -63.42 SS G_CDS: -1.99 Total: -65.41 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 9.70 SS G_CDS: -5.10 Total: 4.60 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -39.97 -5.40 -45.37 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719000316.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.995 kcal (2) G-P(sol) polarization free energy of solvation -39.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds