Wall clock time and date at job start Mon Mar 30 2020 02:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30621 * 1 3 3 Si 1.86803 * 119.99864 * 2 1 4 4 H 1.48504 * 109.46978 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47263 * 119.99612 * 3 2 1 6 6 H 1.48494 * 109.46886 * 240.00009 * 3 2 1 7 7 C 1.40305 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99590 * 154.64157 * 7 2 1 9 9 C 1.40971 * 120.00098 * 334.64584 * 7 2 1 10 10 C 1.40911 * 120.15032 * 334.40380 * 9 7 2 11 11 C 1.36212 * 120.02345 * 179.73249 * 10 9 7 12 12 C 1.39886 * 120.33400 * 0.52329 * 11 10 9 13 Xx 1.56997 * 119.85143 * 179.73343 * 12 11 10 14 13 O 1.42000 * 119.99845 * 180.02562 * 13 12 11 15 14 O 1.41999 * 120.00136 * 0.02562 * 13 12 11 16 15 C 1.39687 * 120.29440 * 359.75489 * 12 11 10 17 16 C 1.37703 * 119.97327 * 359.97438 * 16 12 11 18 17 F 1.35103 * 120.16644 * 179.97438 * 17 16 12 19 18 H 0.97000 * 119.99555 * 174.19520 * 1 2 3 20 19 H 1.07996 * 119.98990 * 359.97438 * 10 9 7 21 20 H 1.07999 * 119.83675 * 180.25445 * 11 10 9 22 21 H 0.96694 * 114.00199 * 180.02562 * 14 13 12 23 22 H 0.96697 * 114.00036 * 180.02562 * 15 13 12 24 23 H 1.08009 * 120.01444 * 180.02562 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 1.2751 2.7465 -0.0006 5 1 3.0939 1.6965 1.2125 6 1 3.0939 1.6964 -1.2125 7 6 2.0077 -1.2151 0.0005 8 1 3.0097 -1.2603 -0.4000 9 6 1.4047 -2.3769 0.5238 10 6 0.3914 -2.2713 1.4972 11 6 -0.1933 -3.3954 1.9971 12 6 0.2143 -4.6591 1.5572 13 8 -0.0512 -7.2319 1.7016 14 8 -1.4874 -5.8283 3.1217 15 6 1.2217 -4.7799 0.5970 16 6 1.8173 -3.6515 0.0792 17 9 2.7923 -3.7638 -0.8493 18 1 -0.4849 -0.8358 -0.0850 19 1 0.0754 -1.2986 1.8442 20 1 -0.9726 -3.3108 2.7401 21 1 -0.5254 -7.9634 2.1201 22 1 -1.8430 -6.6752 3.4241 23 1 1.5326 -5.7579 0.2602 There are 35 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 35 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719000316.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:40 Heat of formation + Delta-G solvation = 33.609892 kcal Electronic energy + Delta-G solvation = -11886.473908 eV Core-core repulsion = 9314.081051 eV Total energy + Delta-G solvation = -2572.392857 eV No. of doubly occupied orbitals = 35 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 199.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.45868 -40.91922 -37.43451 -32.76440 -32.54253 -31.24172 -30.72417 -28.21834 -24.34102 -23.79925 -21.18521 -18.36664 -18.12647 -17.87479 -17.17597 -16.07421 -15.95272 -15.59275 -14.79427 -14.41150 -14.14288 -13.91238 -13.50801 -13.42689 -13.19449 -12.68889 -11.92335 -11.58672 -10.98799 -10.77464 -10.39051 -9.37244 -9.35140 -9.29610 -8.49320 -5.18121 -2.19067 -0.57406 -0.46709 1.06780 1.31186 1.81895 1.87529 2.12967 2.19884 2.37569 2.98625 3.06387 3.29489 3.45094 3.95065 4.04938 4.20856 4.30621 4.47301 4.49954 4.89783 5.00057 5.02670 6.65073 7.54651 7.66132 Molecular weight = 199.06amu Principal moments of inertia in cm(-1) A = 0.047721 B = 0.009701 C = 0.008303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.598201 B = 2885.748395 C = 3371.588469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.051 4.051 3 Si 1.123 2.877 4 H -0.266 1.266 5 H -0.243 1.243 6 H -0.232 1.232 7 C -0.085 4.085 8 H 0.191 0.809 9 C -0.083 4.083 10 C -0.042 4.042 11 C -0.107 4.107 12 C 0.306 3.694 13 O -1.071 7.071 14 O -1.065 7.065 15 C -0.152 4.152 16 C 0.160 3.840 17 F -0.091 7.091 18 H 0.328 0.672 19 H 0.202 0.798 20 H 0.156 0.844 21 H 0.241 0.759 22 H 0.240 0.760 23 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.685 27.446 -10.569 32.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.242 5.242 2 C -0.274 4.274 3 Si 0.933 3.067 4 H -0.190 1.190 5 H -0.166 1.166 6 H -0.154 1.154 7 C -0.104 4.104 8 H 0.208 0.792 9 C -0.087 4.087 10 C -0.059 4.059 11 C -0.125 4.125 12 C 0.294 3.706 13 O -0.892 6.892 14 O -0.886 6.886 15 C -0.171 4.171 16 C 0.140 3.860 17 F -0.069 7.069 18 H 0.146 0.854 19 H 0.219 0.781 20 H 0.173 0.827 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 14.133 30.194 -11.131 35.147 hybrid contribution -1.482 -4.973 0.990 5.283 sum 12.651 25.220 -10.140 29.982 Atomic orbital electron populations 1.70536 1.08961 1.37954 1.06777 1.29993 0.95355 1.07942 0.94089 0.82926 0.75147 0.66946 0.81721 1.18960 1.16605 1.15438 1.24132 1.02050 0.89793 0.94472 0.79239 1.18448 0.98544 0.92243 0.99426 1.21443 0.93544 0.96208 0.94748 1.21193 1.02922 0.85670 1.02701 1.28104 0.89279 0.59614 0.93581 1.93374 1.74601 1.41948 1.79233 1.93373 1.80960 1.29659 1.84582 1.21115 0.96583 1.01986 0.97416 1.16792 0.89545 0.89142 0.90565 1.91598 1.57791 1.96351 1.61181 0.85426 0.78132 0.82667 0.93195 0.93249 0.82836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.61 -10.17 12.30 21.89 0.27 -9.90 14 2 C -0.05 -0.60 4.94 85.38 0.42 -0.18 14 3 Si 1.12 6.97 30.01 68.60 2.06 9.03 14 4 H -0.27 -2.66 7.11 99.48 0.71 -1.96 14 5 H -0.24 -1.38 7.11 99.48 0.71 -0.68 14 6 H -0.23 -0.96 7.11 99.48 0.71 -0.26 14 7 C -0.09 -1.04 8.71 23.44 0.20 -0.83 14 8 H 0.19 0.94 7.80 -2.91 -0.02 0.92 14 9 C -0.08 -1.77 5.31 -21.24 -0.11 -1.88 14 10 C -0.04 -1.04 7.88 22.45 0.18 -0.86 14 11 C -0.11 -4.26 9.67 22.20 0.21 -4.05 14 12 C 0.31 16.52 9.81 23.02 0.23 16.75 14 13 O -1.07 -96.30 17.22 -127.47 -2.20 -98.49 14 14 O -1.07 -94.79 17.22 -127.47 -2.19 -96.99 14 15 C -0.15 -6.48 9.71 22.49 0.22 -6.26 14 16 C 0.16 4.44 7.30 22.86 0.17 4.61 14 17 F -0.09 -2.10 16.71 44.97 0.75 -1.35 14 18 H 0.33 5.94 6.69 -92.71 -0.62 5.32 14 19 H 0.20 3.49 6.48 -2.91 -0.02 3.47 14 20 H 0.16 6.84 7.74 -2.91 -0.02 6.82 14 21 H 0.24 21.87 8.90 -74.06 -0.66 21.21 14 22 H 0.24 21.68 8.90 -74.06 -0.66 21.02 14 23 H 0.15 7.38 7.75 -2.91 -0.02 7.36 14 Total: -1.00 -127.48 232.37 0.30 -127.18 By element: Atomic # 1 Polarization: 63.13 SS G_CDS: 0.10 Total: 63.22 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 1.52 Total: 7.29 kcal Atomic # 7 Polarization: -10.17 SS G_CDS: 0.27 Total: -9.90 kcal Atomic # 8 Polarization: -191.09 SS G_CDS: -4.39 Total: -195.48 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.75 Total: -1.35 kcal Atomic # 14 Polarization: 6.97 SS G_CDS: 2.06 Total: 9.03 kcal Total: -127.48 0.30 -127.18 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719000316.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.793 kcal (2) G-P(sol) polarization free energy of solvation -127.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -127.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds