Wall clock time and date at job start Mon Mar 30 2020 02:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.46938 * 2 1 4 4 C 1.35323 * 116.99982 * 180.02562 * 3 2 1 5 5 N 1.32842 * 119.93248 * 0.02562 * 4 3 2 6 6 C 1.33041 * 120.20217 * 180.02562 * 5 4 3 7 7 N 1.38055 * 119.96820 * 179.97438 * 6 5 4 8 8 N 1.32760 * 120.06838 * 0.25545 * 6 5 4 9 9 C 1.33712 * 119.86425 * 359.51789 * 8 6 5 10 10 C 1.46125 * 120.09895 * 180.21349 * 9 8 6 11 11 H 1.07999 * 120.00000 * 174.29397 * 10 9 8 12 12 C 1.40077 * 120.00175 * 354.28943 * 10 9 8 13 13 N 1.30658 * 119.99909 * 6.20727 * 12 10 9 14 14 Si 1.86796 * 119.99965 * 186.21017 * 12 10 9 15 15 H 1.48501 * 109.47327 * 94.98672 * 14 12 10 16 16 H 1.48499 * 109.46879 * 214.98483 * 14 12 10 17 17 H 1.48496 * 109.47443 * 334.98289 * 14 12 10 18 18 N 1.32552 * 119.93579 * 180.02562 * 4 3 2 19 19 H 1.08997 * 109.47130 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47131 * 299.99812 * 1 2 3 21 21 H 1.09003 * 109.47252 * 59.99606 * 1 2 3 22 22 H 1.09006 * 109.46982 * 240.00473 * 2 1 3 23 23 H 1.08997 * 109.47026 * 120.00004 * 2 1 3 24 24 H 0.96998 * 119.99675 * 0.02562 * 7 6 5 25 25 H 0.97005 * 120.00013 * 179.72427 * 7 6 5 26 26 H 0.97000 * 119.99952 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3479 1.5246 -0.0005 5 7 4.1559 0.4702 -0.0016 6 6 5.4756 0.6384 -0.0016 7 7 6.3109 -0.4609 -0.0021 8 7 5.9903 1.8621 0.0045 9 6 5.1795 2.9254 0.0010 10 6 5.7404 4.2747 0.0030 11 1 5.0888 5.1306 -0.0929 12 6 7.1234 4.4581 0.1293 13 7 7.9227 3.4246 0.1233 14 14 7.8248 6.1803 0.3064 15 1 8.0091 6.4942 1.7461 16 1 9.1352 6.2548 -0.3882 17 1 6.8878 7.1610 -0.2981 18 7 3.8531 2.7501 -0.0001 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8901 23 1 1.8933 -0.5138 0.8900 24 1 5.9354 -1.3552 -0.0028 25 1 7.2732 -0.3388 -0.0061 26 1 8.8804 3.5516 0.2105 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003641628.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:26 Heat of formation + Delta-G solvation = 22.646473 kcal Electronic energy + Delta-G solvation = -13471.590016 eV Core-core repulsion = 10972.197155 eV Total energy + Delta-G solvation = -2499.392860 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.70207 -37.65147 -34.41593 -33.45393 -31.54032 -30.73884 -29.76513 -26.73291 -23.30287 -22.27282 -21.58077 -18.46516 -17.70168 -16.28421 -15.71716 -15.54760 -15.03242 -14.49566 -13.77311 -13.24945 -13.04686 -12.40132 -12.28074 -12.24501 -11.41714 -11.36040 -11.12690 -10.76959 -10.71837 -10.29358 -10.13499 -9.16997 -8.49876 -7.92416 -7.62359 -7.57270 -6.57995 -4.84317 2.73746 2.96916 3.07766 3.12858 3.19404 3.55205 3.92337 4.31651 4.74090 5.31882 5.39353 5.51575 5.65529 5.89783 5.91761 6.14302 6.27354 6.37304 6.66557 7.09870 7.79320 7.91962 8.00265 8.09704 8.52530 8.69563 8.83755 9.06731 10.19101 10.38912 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.045916 B = 0.008843 C = 0.007460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.661501 B = 3165.701680 C = 3752.209290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.077 3.923 3 O -0.303 6.303 4 C 0.546 3.454 5 N -0.728 5.728 6 C 0.597 3.403 7 N -0.830 5.830 8 N -0.592 5.592 9 C 0.454 3.546 10 C -0.395 4.395 11 H 0.098 0.902 12 C 0.068 3.932 13 N -0.717 5.717 14 Si 0.923 3.077 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.258 1.258 18 N -0.641 5.641 19 H 0.073 0.927 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.397 0.603 25 H 0.408 0.592 26 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.080 -5.000 0.113 5.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.000 4.000 3 O -0.205 6.205 4 C 0.232 3.768 5 N -0.483 5.483 6 C 0.231 3.769 7 N -0.381 5.381 8 N -0.329 5.329 9 C 0.211 3.789 10 C -0.433 4.433 11 H 0.116 0.884 12 C -0.158 4.158 13 N -0.340 5.340 14 Si 0.746 3.254 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.182 1.182 18 N -0.384 5.384 19 H 0.092 0.908 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.226 0.774 25 H 0.238 0.762 26 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.166 -4.826 0.124 5.774 hybrid contribution 0.642 -0.069 0.098 0.654 sum -2.524 -4.895 0.223 5.512 Atomic orbital electron populations 1.21800 0.93738 1.02129 1.03097 1.22385 0.93696 0.81792 1.02077 1.85956 1.16861 1.29388 1.88249 1.20220 0.83750 0.86118 0.86705 1.67698 1.05193 1.35275 1.40169 1.19296 0.84082 0.87991 0.85560 1.41422 1.07827 1.04609 1.84244 1.69496 1.37615 0.95844 1.29920 1.21009 0.80808 0.92836 0.84290 1.20122 0.91473 0.88921 1.42815 0.88363 1.26085 0.96950 0.99267 0.93459 1.70090 1.04353 1.31045 1.28540 0.86066 0.78689 0.81402 0.79248 1.19362 1.20064 1.18201 1.68574 1.16360 1.20695 1.32739 0.90824 0.91875 0.91877 0.92182 0.92194 0.77414 0.76161 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 37.16 0.38 -1.54 15 2 C 0.08 1.33 6.03 37.16 0.22 1.55 15 3 O -0.30 -6.90 10.19 -17.66 -0.18 -7.08 15 4 C 0.55 14.33 8.55 -90.59 -0.77 13.56 15 5 N -0.73 -18.10 9.40 -15.56 -0.15 -18.25 15 6 C 0.60 14.97 8.76 -322.26 -2.82 12.15 15 7 N -0.83 -15.91 9.05 29.84 0.27 -15.64 15 8 N -0.59 -16.64 8.25 -12.25 -0.10 -16.74 15 9 C 0.45 13.30 7.57 -155.90 -1.18 12.12 15 10 C -0.39 -10.91 9.62 -35.73 -0.34 -11.26 15 11 H 0.10 2.60 7.85 -52.49 -0.41 2.19 15 12 C 0.07 1.72 5.49 -17.36 -0.10 1.63 15 13 N -0.72 -18.58 11.62 55.55 0.65 -17.93 15 14 Si 0.92 18.41 29.56 -169.99 -5.03 13.39 15 15 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 16 H -0.28 -5.32 7.11 56.52 0.40 -4.92 15 17 H -0.26 -5.09 7.11 56.52 0.40 -4.68 15 18 N -0.64 -18.44 10.50 -13.00 -0.14 -18.58 15 19 H 0.07 0.73 8.14 -51.93 -0.42 0.30 15 20 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.06 1.02 8.11 -51.93 -0.42 0.60 15 23 H 0.06 1.02 8.11 -51.93 -0.42 0.60 15 24 H 0.40 6.34 8.95 -40.82 -0.37 5.97 15 25 H 0.41 7.26 8.95 -40.82 -0.37 6.90 15 26 H 0.27 6.36 8.29 -40.82 -0.34 6.02 15 LS Contribution 240.88 15.07 3.63 3.63 Total: -1.00 -32.10 240.88 -8.04 -40.14 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -2.39 Total: 8.84 kcal Atomic # 6 Polarization: 32.82 SS G_CDS: -4.61 Total: 28.21 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: 0.53 Total: -87.13 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.18 Total: -7.08 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -32.10 -8.04 -40.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003641628.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.786 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds