Wall clock time and date at job start Mon Mar 30 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.35977 * 126.06867 * 124.99776 * 13 12 10 15 15 C 1.35705 * 107.54963 * 180.02562 * 14 13 12 16 16 N 1.40793 * 126.06555 * 179.97438 * 15 14 13 17 17 C 1.40218 * 107.86829 * 0.02562 * 15 14 13 18 18 N 1.30864 * 108.36328 * 359.71586 * 17 15 14 19 19 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 20 20 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 21 21 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 22 22 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 23 23 H 1.07992 * 126.21995 * 359.96675 * 14 13 12 24 24 H 0.97011 * 120.00153 * 0.02562 * 16 15 14 25 25 H 0.96998 * 120.00690 * 179.97438 * 16 15 14 26 26 H 1.08004 * 125.81801 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1960 -5.9764 -0.0016 14 6 2.2371 -6.9949 0.8983 15 6 3.2616 -7.8118 0.5452 16 7 3.6521 -8.9879 1.2134 17 6 3.8631 -7.2761 -0.6026 18 7 3.2227 -6.1833 -0.9318 19 1 -0.4850 0.8401 -0.0004 20 1 0.3535 -2.3906 0.0002 21 1 0.6170 -4.9209 0.8886 22 1 0.6176 -4.9205 -0.8913 23 1 1.5755 -7.1287 1.7412 24 1 3.1714 -9.2788 2.0043 25 1 4.4012 -9.5078 0.8827 26 1 4.7080 -7.6961 -1.1281 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019810615.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:02 Heat of formation + Delta-G solvation = 21.208077 kcal Electronic energy + Delta-G solvation = -13174.094783 eV Core-core repulsion = 10674.639549 eV Total energy + Delta-G solvation = -2499.455234 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.87761 -39.96210 -36.08974 -35.22499 -33.57098 -33.06848 -29.91272 -27.95272 -26.26709 -22.65087 -21.60824 -20.98974 -19.97617 -18.02088 -17.89970 -16.74405 -16.62159 -16.35855 -15.81329 -15.43489 -15.22811 -14.80460 -14.13734 -13.52957 -13.46408 -13.22239 -12.88339 -12.47260 -12.13931 -11.59897 -11.56181 -11.41092 -10.68124 -10.07983 -10.03929 -8.50137 -7.96870 -5.98891 1.09655 1.37458 1.40603 1.51073 1.68293 1.96657 2.17599 2.28869 3.06234 3.17160 3.38111 3.95364 4.13079 4.26685 4.32774 4.37755 4.78793 4.97925 5.37861 5.66350 5.90942 6.19272 6.56097 6.87029 6.93144 7.08470 7.38811 7.48208 8.04903 8.66836 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.080643 B = 0.006312 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.124254 B = 4435.114014 C = 4599.192697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.074 0.926 9 N -0.564 5.564 10 C 0.423 3.577 11 O -0.617 6.617 12 C 0.137 3.863 13 N -0.362 5.362 14 C -0.041 4.041 15 C 0.051 3.949 16 N -0.865 5.865 17 C -0.015 4.015 18 N -0.298 5.298 19 H 0.280 0.720 20 H 0.401 0.599 21 H 0.152 0.848 22 H 0.119 0.881 23 H 0.201 0.799 24 H 0.404 0.596 25 H 0.404 0.596 26 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 -13.541 3.061 13.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.208 4.208 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.191 1.191 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.092 0.908 9 N -0.202 5.202 10 C 0.209 3.791 11 O -0.503 6.503 12 C 0.012 3.988 13 N -0.150 5.150 14 C -0.187 4.187 15 C -0.059 4.059 16 N -0.414 5.414 17 C -0.204 4.204 18 N -0.121 5.121 19 H 0.089 0.911 20 H 0.235 0.765 21 H 0.170 0.830 22 H 0.137 0.863 23 H 0.217 0.783 24 H 0.233 0.767 25 H 0.233 0.767 26 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -0.147 -12.236 2.198 12.433 hybrid contribution 0.137 0.053 0.640 0.656 sum -0.010 -12.183 2.838 12.509 Atomic orbital electron populations 1.69646 1.06662 1.29545 1.49711 1.25994 0.96572 1.02224 0.96010 0.85016 0.77849 0.76763 0.78872 1.19972 1.19099 1.19743 1.19577 0.92597 0.84002 1.50433 0.90752 1.41807 1.09421 1.04276 1.64721 1.20926 0.88509 0.86295 0.83364 1.90566 1.15901 1.87637 1.56187 1.21403 0.88774 0.81141 1.07473 1.47718 1.25767 1.19701 1.21861 1.22253 1.04606 0.91756 1.00110 1.17788 0.97873 0.93539 0.96675 1.41347 1.40520 1.25369 1.34194 1.24018 1.02915 0.94713 0.98707 1.77289 1.01346 1.17801 1.15661 0.91080 0.76481 0.83015 0.86310 0.78260 0.76707 0.76650 0.78528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.72 13.05 21.66 0.28 -48.44 15 2 C -0.01 -0.40 5.50 84.92 0.47 0.07 15 3 Si 0.99 43.13 29.55 68.60 2.03 45.16 15 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 15 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 7 C -0.34 -19.31 9.68 84.04 0.81 -18.49 15 8 H 0.07 4.61 7.16 -2.91 -0.02 4.59 15 9 N -0.56 -28.83 5.29 -306.98 -1.62 -30.46 15 10 C 0.42 20.61 7.81 87.66 0.68 21.30 15 11 O -0.62 -36.37 15.29 -3.07 -0.05 -36.41 15 12 C 0.14 4.75 7.00 85.63 0.60 5.34 15 13 N -0.36 -13.27 3.43 -350.63 -1.20 -14.47 15 14 C -0.04 -1.18 11.53 83.46 0.96 -0.22 15 15 C 0.05 1.41 7.26 37.59 0.27 1.69 15 16 N -0.86 -15.84 9.20 -51.74 -0.48 -16.32 15 17 C -0.02 -0.49 12.03 85.32 1.03 0.53 15 18 N -0.30 -12.31 11.65 -56.78 -0.66 -12.98 15 19 H 0.28 13.93 8.31 -92.71 -0.77 13.16 15 20 H 0.40 18.82 7.90 -92.71 -0.73 18.09 15 21 H 0.15 3.84 8.08 -2.39 -0.02 3.82 15 22 H 0.12 3.58 8.14 -2.39 -0.02 3.56 15 23 H 0.20 4.06 8.06 -2.91 -0.02 4.04 15 24 H 0.40 5.59 8.96 -92.70 -0.83 4.76 15 25 H 0.40 5.83 8.96 -92.71 -0.83 5.00 15 26 H 0.20 5.04 8.06 -2.91 -0.02 5.01 15 Total: -1.00 -76.01 243.19 1.98 -74.03 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: -1.15 Total: 29.67 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 4.83 Total: 10.22 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -3.68 Total: -122.67 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.05 Total: -36.41 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -76.01 1.98 -74.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019810615.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.241 kcal (2) G-P(sol) polarization free energy of solvation -76.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds