Wall clock time and date at job start Mon Mar 30 2020 02:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35532 * 116.99875 * 2 1 4 4 C 1.39517 * 120.39639 * 180.02562 * 3 2 1 5 5 C 1.39521 * 118.56916 * 179.97438 * 4 3 2 6 6 O 1.35531 * 120.40447 * 180.02562 * 5 4 3 7 7 C 1.42896 * 117.00588 * 179.97438 * 6 5 4 8 8 N 1.32503 * 119.19733 * 359.97438 * 5 4 3 9 9 C 1.33428 * 120.74508 * 0.02562 * 8 5 4 10 10 C 1.41565 * 119.22843 * 179.97438 * 9 8 5 11 11 H 1.07999 * 119.99968 * 0.02562 * 10 9 8 12 12 C 1.40059 * 119.99841 * 179.97438 * 10 9 8 13 13 N 1.30690 * 120.00015 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99642 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47035 * 60.00568 * 14 12 10 16 16 H 1.48503 * 109.46848 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47295 * 299.99967 * 14 12 10 18 18 N 1.32502 * 120.39979 * 0.27227 * 3 2 1 19 19 H 1.09003 * 109.47181 * 60.00196 * 1 2 3 20 20 H 1.08996 * 109.47180 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47096 * 300.00121 * 1 2 3 22 22 H 1.07991 * 120.71950 * 359.97418 * 4 3 2 23 23 H 1.08993 * 109.47134 * 179.97438 * 7 6 5 24 24 H 1.08994 * 109.47192 * 300.00368 * 7 6 5 25 25 H 1.09002 * 109.46874 * 59.99985 * 7 6 5 26 26 H 0.97005 * 119.99927 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 3.4370 1.2903 -0.0005 5 6 4.0305 2.5530 -0.0011 6 8 5.3801 2.6766 -0.0021 7 6 5.9102 4.0036 -0.0032 8 7 3.2585 3.6300 -0.0016 9 6 1.9291 3.5163 -0.0010 10 6 1.1352 4.6884 -0.0010 11 1 1.6067 5.6600 -0.0019 12 6 -0.2618 4.5878 -0.0010 13 7 -0.8324 3.4121 -0.0005 14 14 -1.3094 6.1344 -0.0003 15 1 -1.0076 6.9373 -1.2125 16 1 -2.7462 5.7590 0.0002 17 1 -1.0075 6.9363 1.2125 18 7 1.3304 2.3239 0.0054 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 4.0427 0.3962 -0.0005 23 1 6.9992 3.9599 -0.0035 24 1 5.5671 4.5312 -0.8931 25 1 5.5684 4.5321 0.8868 26 1 -1.7999 3.3424 -0.0002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034325470.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:31 Heat of formation + Delta-G solvation = -29.681755 kcal Electronic energy + Delta-G solvation = -13742.981211 eV Core-core repulsion = 11209.026477 eV Total energy + Delta-G solvation = -2533.954734 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.49833 -37.92539 -36.51435 -33.61895 -30.78178 -30.18272 -27.00188 -26.94112 -25.41794 -22.02552 -21.54562 -18.53660 -17.03613 -16.44420 -15.22527 -15.22056 -14.89525 -14.67951 -14.16332 -13.69734 -13.02065 -12.85754 -12.46628 -11.62183 -11.34077 -11.20922 -11.07300 -10.78444 -10.73022 -10.41981 -10.32079 -9.23312 -8.99105 -8.14258 -7.65282 -7.64453 -6.64109 -4.85025 2.62467 2.97352 3.01364 3.04056 3.11477 3.71445 3.83551 4.54573 4.59638 5.78528 5.81006 5.81146 5.94349 5.99656 6.04843 6.25599 6.26828 6.60467 6.63417 6.90989 6.94835 7.00736 7.96146 8.02745 8.31316 8.53863 8.57036 9.02421 10.04223 10.19761 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.026114 B = 0.013246 C = 0.008845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.965863 B = 2113.268800 C = 3164.786977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 O -0.323 6.323 3 C 0.379 3.621 4 C -0.390 4.390 5 C 0.386 3.614 6 O -0.320 6.320 7 C 0.048 3.952 8 N -0.653 5.653 9 C 0.444 3.556 10 C -0.397 4.397 11 H 0.094 0.906 12 C 0.069 3.931 13 N -0.710 5.710 14 Si 0.921 3.079 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.263 1.263 18 N -0.567 5.567 19 H 0.058 0.942 20 H 0.073 0.927 21 H 0.058 0.942 22 H 0.117 0.883 23 H 0.082 0.918 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.963 -0.152 -0.016 0.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.229 6.229 3 C 0.187 3.813 4 C -0.419 4.419 5 C 0.195 3.805 6 O -0.227 6.227 7 C -0.048 4.048 8 N -0.392 5.392 9 C 0.208 3.792 10 C -0.432 4.432 11 H 0.112 0.888 12 C -0.158 4.158 13 N -0.332 5.332 14 Si 0.744 3.256 15 H -0.187 1.187 16 H -0.201 1.201 17 H -0.187 1.187 18 N -0.302 5.302 19 H 0.077 0.923 20 H 0.092 0.908 21 H 0.077 0.923 22 H 0.135 0.865 23 H 0.100 0.900 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.479 0.084 -0.008 0.486 hybrid contribution -0.198 0.147 -0.003 0.246 sum 0.281 0.230 -0.011 0.363 Atomic orbital electron populations 1.22603 0.78075 1.00174 1.03348 1.86036 1.22362 1.26194 1.88271 1.19772 0.88037 0.85844 0.87658 1.19780 0.92285 0.96015 1.33780 1.19412 0.83039 0.89891 0.88118 1.86077 1.17842 1.30223 1.88522 1.22626 0.97020 0.82823 1.02329 1.68366 1.07873 1.30432 1.32532 1.19226 0.83524 0.90113 0.86343 1.19294 0.89803 0.92201 1.41951 0.88786 1.26088 0.98667 0.97728 0.93335 1.70112 1.11191 1.24348 1.27554 0.86168 0.78102 0.81176 0.80117 1.18738 1.20115 1.18743 1.69087 1.36829 0.96854 1.27457 0.92323 0.90847 0.92315 0.86532 0.90002 0.92795 0.92808 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.06 10.41 101.05 1.05 2.11 15 2 O -0.32 -7.48 10.49 -18.29 -0.19 -7.68 15 3 C 0.38 9.88 7.53 -16.79 -0.13 9.75 15 4 C -0.39 -9.84 10.10 -38.63 -0.39 -10.23 15 5 C 0.39 9.75 7.53 -16.78 -0.13 9.62 15 6 O -0.32 -7.00 10.49 -18.29 -0.19 -7.20 15 7 C 0.05 0.84 10.41 101.05 1.05 1.89 15 8 N -0.65 -17.57 9.28 -12.77 -0.12 -17.69 15 9 C 0.44 12.54 7.37 -158.36 -1.17 11.38 15 10 C -0.40 -10.61 9.37 -37.63 -0.35 -10.96 15 11 H 0.09 2.39 7.85 -52.49 -0.41 1.98 15 12 C 0.07 1.68 5.50 -17.35 -0.10 1.59 15 13 N -0.71 -17.77 11.42 55.55 0.63 -17.13 15 14 Si 0.92 17.90 29.56 -169.99 -5.02 12.88 15 15 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 16 H -0.28 -5.18 7.11 56.52 0.40 -4.78 15 17 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 18 N -0.57 -15.72 6.80 -12.77 -0.09 -15.80 15 19 H 0.06 1.22 8.12 -51.93 -0.42 0.80 15 20 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 21 H 0.06 1.22 8.11 -51.93 -0.42 0.80 15 22 H 0.12 2.69 8.06 -52.49 -0.42 2.27 15 23 H 0.08 1.09 8.14 -51.93 -0.42 0.66 15 24 H 0.05 0.96 8.12 -51.93 -0.42 0.53 15 25 H 0.05 0.95 8.12 -51.93 -0.42 0.53 15 26 H 0.28 6.17 8.29 -40.82 -0.34 5.83 15 LS Contribution 240.52 15.07 3.62 3.62 Total: -1.00 -29.83 240.52 -4.01 -33.84 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -2.50 Total: 0.01 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: -0.15 Total: 15.14 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.43 Total: -50.62 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.38 Total: -14.87 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.02 Total: 12.88 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.83 -4.01 -33.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034325470.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.161 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds