Wall clock time and date at job start Mon Mar 30 2020 02:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00032 * 2 1 4 4 H 1.48500 * 109.47049 * 240.00205 * 3 2 1 5 5 H 1.48499 * 109.47266 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47109 * 120.00428 * 3 2 1 7 7 C 1.37876 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00194 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00018 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46909 * 300.00076 * 9 7 2 11 11 C 1.52997 * 109.47011 * 59.99968 * 9 7 2 12 12 O 1.42905 * 109.47264 * 185.00168 * 11 9 7 13 13 C 1.50699 * 109.47177 * 180.02562 * 9 7 2 14 14 C 1.38220 * 120.01044 * 299.72428 * 13 9 7 15 15 C 1.38223 * 120.02026 * 179.72196 * 14 13 9 16 16 C 1.38275 * 120.05263 * 0.55571 * 15 14 13 17 17 C 1.38169 * 120.02327 * 359.72325 * 16 15 14 18 18 C 1.38443 * 120.01049 * 119.99949 * 13 9 7 19 19 F 1.35096 * 120.02831 * 0.02562 * 18 13 9 20 20 H 0.96996 * 119.99992 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47289 * 65.00001 * 11 9 7 22 22 H 1.09004 * 109.47261 * 305.00257 * 11 9 7 23 23 H 0.96691 * 114.00079 * 179.97438 * 12 11 9 24 24 H 1.07992 * 119.98846 * 359.97438 * 14 13 9 25 25 H 1.07994 * 119.97460 * 180.27325 * 15 14 13 26 26 H 1.07995 * 119.98377 * 179.74326 * 16 15 14 27 27 H 1.08001 * 120.00994 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 6 0.3710 -2.5799 -1.2494 12 8 -0.4300 -3.7620 -1.1922 13 6 2.2304 -3.6446 -0.0005 14 6 3.1307 -3.7844 -1.0399 15 6 4.0328 -4.8316 -1.0373 16 6 4.0281 -5.7470 -0.0009 17 6 3.1252 -5.6124 1.0363 18 6 2.2247 -4.5604 1.0377 19 9 1.3412 -4.4282 2.0510 20 1 -0.4850 0.8400 0.0004 21 1 1.0023 -2.6114 -2.1374 22 1 -0.2765 -1.7042 -1.2949 23 1 -1.0145 -3.8783 -1.9535 24 1 3.1319 -3.0729 -1.8523 25 1 4.7389 -4.9376 -1.8476 26 1 4.7308 -6.5671 -0.0020 27 1 3.1220 -6.3273 1.8458 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034596710.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:48 Heat of formation + Delta-G solvation = -101.750561 kcal Electronic energy + Delta-G solvation = -13734.857774 eV Core-core repulsion = 11177.857941 eV Total energy + Delta-G solvation = -2556.999833 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -49.72016 -39.98508 -37.74273 -35.46673 -33.19710 -31.26927 -29.47544 -26.65600 -24.43007 -23.26785 -21.48391 -18.74255 -18.43347 -17.77070 -17.18590 -16.83240 -16.42074 -16.12622 -15.28564 -14.90692 -14.53843 -14.30762 -13.91122 -13.65046 -13.18515 -12.81041 -12.75674 -12.48540 -12.22987 -11.90097 -11.53515 -11.26790 -10.90626 -10.36618 -9.68038 -9.34491 -8.19363 -6.37211 0.39945 0.52293 1.41278 1.43322 1.51570 2.37863 2.87226 3.05646 3.56466 3.85233 4.02608 4.09557 4.30076 4.52657 4.61459 4.63514 4.92995 5.16429 5.25757 5.32726 5.39764 5.50837 5.61490 5.75953 5.89867 6.13549 6.21786 6.71777 7.09604 7.31962 8.85248 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.032397 B = 0.011169 C = 0.010240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.081045 B = 2506.317122 C = 2733.840096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.063 0.937 9 C 0.079 3.921 10 H -0.005 1.005 11 C 0.091 3.909 12 O -0.598 6.598 13 C -0.091 4.091 14 C -0.103 4.103 15 C -0.123 4.123 16 C -0.105 4.105 17 C -0.155 4.155 18 C 0.049 3.951 19 F -0.163 7.163 20 H 0.266 0.734 21 H 0.032 0.968 22 H 0.058 0.942 23 H 0.380 0.620 24 H 0.125 0.875 25 H 0.160 0.840 26 H 0.170 0.830 27 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.967 -8.110 -3.720 11.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.081 0.919 9 C 0.060 3.940 10 H 0.013 0.987 11 C 0.014 3.986 12 O -0.405 6.405 13 C -0.092 4.092 14 C -0.121 4.121 15 C -0.141 4.141 16 C -0.123 4.123 17 C -0.174 4.174 18 C 0.030 3.970 19 F -0.142 7.142 20 H 0.075 0.925 21 H 0.050 0.950 22 H 0.076 0.924 23 H 0.227 0.773 24 H 0.143 0.857 25 H 0.178 0.822 26 H 0.188 0.812 27 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.096 -8.053 -3.114 11.176 hybrid contribution -0.719 1.266 -0.035 1.457 sum 6.377 -6.786 -3.149 9.831 Atomic orbital electron populations 1.70018 1.07474 1.27913 1.50180 1.25892 0.95773 1.02918 0.93983 0.85482 0.78303 0.77986 0.79191 1.18551 1.20669 1.19920 1.21247 0.93136 0.90125 1.52089 0.91884 1.17631 0.91340 0.91213 0.93784 0.98661 1.22350 0.92983 0.85979 0.97295 1.86455 1.58776 1.45980 1.49264 1.20459 0.98561 0.95777 0.94362 1.21025 0.94818 0.98810 0.97464 1.21553 0.98674 0.93907 0.99931 1.21312 0.98275 1.00106 0.92568 1.21355 0.96451 0.97373 1.02183 1.18160 0.92512 0.99032 0.87318 1.91371 1.68004 1.95977 1.58810 0.92465 0.94952 0.92404 0.77283 0.85677 0.82209 0.81233 0.83179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.33 11.29 21.45 0.24 -53.09 15 2 C 0.01 0.76 5.29 84.65 0.45 1.21 15 3 Si 0.97 42.99 29.54 68.60 2.03 45.01 15 4 H -0.26 -10.95 7.11 99.48 0.71 -10.25 15 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 7 C -0.53 -29.53 8.25 25.60 0.21 -29.32 15 8 H 0.06 3.42 7.61 -2.91 -0.02 3.40 15 9 C 0.08 4.30 2.17 -12.29 -0.03 4.28 15 10 H 0.00 -0.30 7.13 -2.39 -0.02 -0.32 15 11 C 0.09 4.58 6.16 71.98 0.44 5.02 15 12 O -0.60 -27.42 13.41 -148.98 -2.00 -29.42 15 13 C -0.09 -4.24 4.51 -19.82 -0.09 -4.33 15 14 C -0.10 -3.97 8.66 22.26 0.19 -3.78 15 15 C -0.12 -3.54 10.04 22.28 0.22 -3.31 15 16 C -0.11 -2.79 10.04 22.26 0.22 -2.56 15 17 C -0.16 -5.11 10.03 22.31 0.22 -4.88 15 18 C 0.05 2.15 7.25 22.38 0.16 2.31 15 19 F -0.16 -7.92 16.19 44.97 0.73 -7.19 15 20 H 0.27 14.60 8.31 -92.71 -0.77 13.83 15 21 H 0.03 1.50 7.21 -2.39 -0.02 1.48 15 22 H 0.06 3.18 5.95 -2.38 -0.01 3.17 15 23 H 0.38 12.85 9.12 -74.06 -0.68 12.17 15 24 H 0.13 4.75 7.53 -2.91 -0.02 4.73 15 25 H 0.16 3.25 8.06 -2.91 -0.02 3.23 15 26 H 0.17 2.88 8.06 -2.91 -0.02 2.85 15 27 H 0.15 4.01 8.06 -2.91 -0.02 3.99 15 Total: -1.00 -68.17 241.20 3.52 -64.65 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.51 Total: 15.41 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 2.01 Total: -35.37 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.24 Total: -53.09 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -2.00 Total: -29.42 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 0.73 Total: -7.19 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -68.17 3.52 -64.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034596710.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.099 kcal (2) G-P(sol) polarization free energy of solvation -68.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds