Wall clock time and date at job start Mon Mar 30 2020 02:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47114 * 304.99535 * 10 9 7 12 12 O 1.42900 * 109.47439 * 64.99983 * 10 9 7 13 13 C 1.50700 * 109.47081 * 185.00082 * 10 9 7 14 14 C 1.38224 * 120.01089 * 264.99518 * 13 10 9 15 15 C 1.38219 * 120.02492 * 179.97438 * 14 13 10 16 16 C 1.38265 * 120.05397 * 0.02562 * 15 14 13 17 17 C 1.38180 * 120.02476 * 359.97438 * 16 15 14 18 18 C 1.38435 * 120.01416 * 84.72540 * 13 10 9 19 19 F 1.35095 * 120.02490 * 359.97438 * 18 13 10 20 20 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 22 22 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 23 23 H 0.96702 * 113.99716 * 59.99819 * 12 10 9 24 24 H 1.08001 * 119.98742 * 359.96089 * 14 13 10 25 25 H 1.08001 * 119.97503 * 180.02562 * 15 14 13 26 26 H 1.08001 * 119.99490 * 179.97438 * 16 15 14 27 27 H 1.07996 * 120.01440 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2450 -3.6621 0.0134 11 1 2.9329 -3.5576 -0.8256 12 8 2.9818 -3.6511 1.2378 13 6 1.4961 -4.9640 -0.1104 14 6 1.1584 -5.6779 1.0240 15 6 0.4710 -6.8717 0.9107 16 6 0.1209 -7.3535 -0.3370 17 6 0.4574 -6.6415 -1.4725 18 6 1.1411 -5.4425 -1.3600 19 9 1.4655 -4.7426 -2.4691 20 1 -0.4851 -0.8400 -0.0004 21 1 0.6205 -2.5547 0.8933 22 1 0.6280 -2.5591 -0.8867 23 1 2.4321 -3.7403 2.0284 24 1 1.4319 -5.3029 1.9991 25 1 0.2072 -7.4287 1.7977 26 1 -0.4159 -8.2866 -0.4244 27 1 0.1842 -7.0182 -2.4471 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041200651.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:09 Heat of formation + Delta-G solvation = -86.551543 kcal Electronic energy + Delta-G solvation = -13490.270008 eV Core-core repulsion = 10933.929254 eV Total energy + Delta-G solvation = -2556.340754 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.57393 -39.13829 -36.52064 -33.18867 -31.33876 -30.42127 -28.53135 -24.63574 -22.58207 -22.26773 -20.67144 -17.80140 -16.94665 -16.29741 -15.95407 -15.25583 -14.91208 -14.14635 -13.96106 -13.79636 -13.59175 -12.91165 -12.35485 -12.12803 -11.66150 -11.36106 -11.19184 -11.02321 -10.55984 -10.33487 -10.08622 -9.38087 -8.80710 -8.61963 -8.34362 -8.26741 -6.35853 -4.04566 1.32259 1.35763 3.46237 3.50066 3.66221 3.73720 4.48444 4.55610 4.86152 4.91490 5.06053 5.08990 5.39685 5.43825 5.49732 5.90487 6.06617 6.18859 6.30143 6.39934 6.47263 6.59780 7.04129 7.16179 7.32505 8.13440 8.29662 8.49404 8.87343 9.66442 11.04523 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.047444 B = 0.008320 C = 0.007918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.032057 B = 3364.596575 C = 3535.332275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 1.073 2.927 4 H -0.288 1.288 5 H -0.285 1.285 6 H -0.287 1.287 7 C -0.592 4.592 8 H 0.055 0.945 9 C -0.010 4.010 10 C 0.153 3.847 11 H 0.101 0.899 12 O -0.549 6.549 13 C -0.132 4.132 14 C -0.090 4.090 15 C -0.130 4.130 16 C -0.106 4.106 17 C -0.156 4.156 18 C 0.103 3.897 19 F -0.134 7.134 20 H 0.267 0.733 21 H 0.012 0.988 22 H 0.017 0.983 23 H 0.364 0.636 24 H 0.130 0.870 25 H 0.126 0.874 26 H 0.128 0.872 27 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.472 -13.339 0.711 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.189 4.189 3 Si 0.902 3.098 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.213 1.213 7 C -0.630 4.630 8 H 0.074 0.926 9 C -0.047 4.047 10 C 0.094 3.906 11 H 0.119 0.881 12 O -0.354 6.354 13 C -0.134 4.134 14 C -0.109 4.109 15 C -0.148 4.148 16 C -0.124 4.124 17 C -0.174 4.174 18 C 0.083 3.917 19 F -0.113 7.113 20 H 0.077 0.923 21 H 0.030 0.970 22 H 0.036 0.964 23 H 0.211 0.789 24 H 0.148 0.852 25 H 0.144 0.856 26 H 0.146 0.854 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.804 -11.592 0.256 11.623 hybrid contribution -0.377 -1.698 0.065 1.741 sum 0.427 -13.291 0.321 13.301 Atomic orbital electron populations 1.70766 1.06909 1.30464 1.46947 1.25882 0.96499 1.02795 0.93768 0.83480 0.74706 0.74878 0.76767 1.21456 1.21047 1.21345 1.21967 0.94632 0.91177 1.55261 0.92635 1.19852 0.94494 0.93435 0.96920 1.20917 0.93615 0.88749 0.87329 0.88101 1.86555 1.37287 1.96290 1.15269 1.21206 1.00515 0.99489 0.92156 1.20813 0.97479 0.94567 0.97991 1.21126 0.99526 0.96546 0.97636 1.20905 0.99924 0.99734 0.91856 1.21103 1.01382 0.94721 1.00240 1.17530 1.00069 0.91598 0.82470 1.91508 1.90634 1.78299 1.50845 0.92277 0.97006 0.96449 0.78893 0.85219 0.85616 0.85437 0.85040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.43 13.65 55.43 0.76 -27.68 15 2 C 0.01 0.41 5.46 -17.82 -0.10 0.31 15 3 Si 1.07 25.97 29.90 -169.99 -5.08 20.88 15 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 5 H -0.28 -6.81 7.11 56.52 0.40 -6.40 15 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 7 C -0.59 -17.26 8.88 -34.44 -0.31 -17.56 15 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 15 9 C -0.01 -0.26 3.95 -27.88 -0.11 -0.37 15 10 C 0.15 3.34 2.92 -27.88 -0.08 3.26 15 11 H 0.10 2.33 7.80 -51.93 -0.41 1.92 15 12 O -0.55 -11.43 12.74 -35.23 -0.45 -11.88 15 13 C -0.13 -2.45 5.07 -104.55 -0.53 -2.98 15 14 C -0.09 -1.38 9.30 -39.59 -0.37 -1.75 15 15 C -0.13 -1.65 10.04 -39.58 -0.40 -2.05 15 16 C -0.11 -1.30 10.04 -39.59 -0.40 -1.70 15 17 C -0.16 -2.22 10.03 -39.51 -0.40 -2.61 15 18 C 0.10 1.83 7.24 -39.42 -0.29 1.55 15 19 F -0.13 -2.62 16.57 2.25 0.04 -2.58 15 20 H 0.27 8.28 7.22 -40.82 -0.29 7.98 15 21 H 0.01 0.31 8.00 -51.93 -0.42 -0.10 15 22 H 0.02 0.48 8.01 -51.93 -0.42 0.06 15 23 H 0.36 6.27 7.33 45.56 0.33 6.60 15 24 H 0.13 1.73 6.41 -52.49 -0.34 1.40 15 25 H 0.13 1.21 8.06 -52.49 -0.42 0.78 15 26 H 0.13 1.14 8.06 -52.49 -0.42 0.72 15 27 H 0.13 1.55 8.06 -52.49 -0.42 1.13 15 LS Contribution 243.82 15.07 3.67 3.67 Total: -1.00 -32.69 243.82 -6.04 -38.73 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -2.00 Total: 2.77 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -2.97 Total: -23.91 kcal Atomic # 7 Polarization: -28.43 SS G_CDS: 0.76 Total: -27.68 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.45 Total: -11.88 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.08 Total: 20.88 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -32.69 -6.04 -38.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041200651.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.825 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds