Wall clock time and date at job start Mon Mar 30 2020 02:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7 12 12 O 1.42903 * 109.47386 * 295.00166 * 10 9 7 13 13 C 1.50698 * 109.47721 * 174.99887 * 10 9 7 14 14 C 1.38218 * 120.01342 * 94.71922 * 13 10 9 15 15 C 1.38220 * 120.02466 * 179.72497 * 14 13 10 16 16 C 1.38268 * 120.05239 * 0.56277 * 15 14 13 17 17 C 1.38176 * 120.02660 * 359.71482 * 16 15 14 18 18 C 1.38436 * 120.01312 * 275.00565 * 13 10 9 19 19 F 1.35105 * 120.02434 * 0.02562 * 18 13 10 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 0.96705 * 113.99520 * 300.00083 * 12 10 9 24 24 H 1.07995 * 119.98652 * 0.02562 * 14 13 10 25 25 H 1.08001 * 119.97721 * 180.28069 * 15 14 13 26 26 H 1.08000 * 119.99120 * 179.74260 * 16 15 14 27 27 H 1.07995 * 120.01620 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 8 2.9875 -3.6542 -1.2205 13 6 1.4958 -4.9637 0.1244 14 6 1.1581 -5.6778 -1.0099 15 6 0.4759 -6.8744 -0.8963 16 6 0.1201 -7.3529 0.3512 17 6 0.4515 -6.6380 1.4863 18 6 1.1401 -5.4418 1.3740 19 9 1.4641 -4.7415 2.4830 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.4414 -3.7456 -2.0134 24 1 1.4318 -5.3029 -1.9850 25 1 0.2164 -7.4340 -1.7828 26 1 -0.4167 -8.2860 0.4386 27 1 0.1739 -7.0121 2.4606 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041200654.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:11 Heat of formation + Delta-G solvation = -104.393669 kcal Electronic energy + Delta-G solvation = -13453.554845 eV Core-core repulsion = 10896.440398 eV Total energy + Delta-G solvation = -2557.114447 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.88280 -40.33257 -37.95087 -35.04542 -32.76642 -31.52399 -30.56318 -26.78377 -24.05073 -23.52107 -22.02991 -19.16294 -18.39232 -17.60438 -17.36185 -16.76203 -16.51463 -15.96527 -15.55029 -15.15373 -14.78332 -14.37665 -14.06589 -13.38150 -13.19654 -13.05540 -12.71620 -12.55089 -12.35813 -12.15428 -11.97604 -11.32375 -10.81774 -10.62457 -9.86031 -9.54234 -8.23737 -6.34559 0.22287 0.29320 1.37991 1.41422 1.49604 2.38738 2.67484 3.08515 3.36540 3.57161 3.70252 3.86814 4.11182 4.32839 4.42949 4.57507 4.69435 4.94036 5.12827 5.20837 5.28953 5.35987 5.47469 5.57828 5.72091 5.99052 6.15727 6.76541 6.85949 7.33846 8.87704 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.047292 B = 0.008274 C = 0.007881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.925634 B = 3383.129903 C = 3552.126852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.536 4.536 8 H 0.056 0.944 9 C 0.014 3.986 10 C 0.160 3.840 11 H 0.078 0.922 12 O -0.558 6.558 13 C -0.160 4.160 14 C -0.099 4.099 15 C -0.120 4.120 16 C -0.092 4.092 17 C -0.156 4.156 18 C 0.066 3.934 19 F -0.156 7.156 20 H 0.265 0.735 21 H -0.006 1.006 22 H 0.006 0.994 23 H 0.380 0.620 24 H 0.144 0.856 25 H 0.166 0.834 26 H 0.172 0.828 27 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 -14.512 -1.595 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.574 4.574 8 H 0.074 0.926 9 C -0.023 4.023 10 C 0.101 3.899 11 H 0.096 0.904 12 O -0.365 6.365 13 C -0.161 4.161 14 C -0.116 4.116 15 C -0.138 4.138 16 C -0.110 4.110 17 C -0.174 4.174 18 C 0.047 3.953 19 F -0.135 7.135 20 H 0.074 0.926 21 H 0.012 0.988 22 H 0.024 0.976 23 H 0.229 0.771 24 H 0.162 0.838 25 H 0.184 0.816 26 H 0.190 0.810 27 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.153 -14.302 -1.143 14.349 hybrid contribution -0.155 1.329 0.162 1.348 sum -0.002 -12.973 -0.981 13.010 Atomic orbital electron populations 1.70082 1.07693 1.27955 1.51472 1.25937 0.95777 1.03238 0.94564 0.85484 0.78286 0.78014 0.79166 1.19069 1.20465 1.19506 1.21454 0.93326 0.91840 1.50755 0.92569 1.19535 0.94041 0.93037 0.95722 1.20554 0.92439 0.89890 0.87050 0.90414 1.86485 1.37818 1.96388 1.15782 1.20954 1.02511 0.98848 0.93823 1.21107 0.97661 0.95392 0.97484 1.21612 0.97443 0.95274 0.99461 1.21468 0.98251 1.00493 0.90786 1.21450 1.00198 0.93379 1.02397 1.18012 1.02150 0.93287 0.81832 1.91441 1.91157 1.79102 1.51796 0.92637 0.98776 0.97604 0.77111 0.83794 0.81613 0.81048 0.82840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.62 13.29 21.45 0.28 -57.34 15 2 C 0.00 0.16 5.46 84.66 0.46 0.62 15 3 Si 0.97 45.68 29.54 68.60 2.03 47.70 15 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 15 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 15 7 C -0.54 -31.80 8.88 25.60 0.23 -31.57 15 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 15 9 C 0.01 0.76 4.64 29.85 0.14 0.90 15 10 C 0.16 7.23 2.92 29.85 0.09 7.32 15 11 H 0.08 3.77 7.79 -2.38 -0.02 3.75 15 12 O -0.56 -23.24 12.75 -148.98 -1.90 -25.14 15 13 C -0.16 -6.02 5.07 -19.82 -0.10 -6.12 15 14 C -0.10 -2.87 9.30 22.26 0.21 -2.66 15 15 C -0.12 -2.60 10.04 22.27 0.22 -2.37 15 16 C -0.09 -1.90 10.04 22.26 0.22 -1.68 15 17 C -0.16 -4.17 10.03 22.31 0.22 -3.94 15 18 C 0.07 2.41 7.24 22.38 0.16 2.57 15 19 F -0.16 -6.44 16.57 44.97 0.75 -5.69 15 20 H 0.26 15.36 8.31 -92.71 -0.77 14.59 15 21 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 15 22 H 0.01 0.32 8.14 -2.39 -0.02 0.30 15 23 H 0.38 12.90 7.32 -74.05 -0.54 12.36 15 24 H 0.14 3.61 6.41 -2.91 -0.02 3.59 15 25 H 0.17 2.26 8.06 -2.91 -0.02 2.24 15 26 H 0.17 2.04 8.06 -2.91 -0.02 2.01 15 27 H 0.15 3.29 8.06 -2.91 -0.02 3.27 15 Total: -1.00 -71.15 245.13 3.65 -67.50 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.64 Total: 9.91 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 1.85 Total: -36.94 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.28 Total: -57.34 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -1.90 Total: -25.14 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.75 Total: -5.69 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.15 3.65 -67.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041200654.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.890 kcal (2) G-P(sol) polarization free energy of solvation -71.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds