Wall clock time and date at job start Mon Mar 30 2020 02:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99832 * 2 1 4 4 H 1.48504 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47166 * 299.99967 * 3 2 1 6 6 H 1.48502 * 109.47371 * 59.99831 * 3 2 1 7 7 C 1.37871 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00211 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.46813 * 300.00088 * 9 7 2 11 11 O 1.42888 * 109.46867 * 60.00040 * 9 7 2 12 12 C 1.53000 * 109.47229 * 180.02562 * 9 7 2 13 13 C 1.50696 * 109.46963 * 174.99863 * 12 9 7 14 14 C 1.38248 * 119.97128 * 89.99994 * 13 12 9 15 15 C 1.38196 * 120.02484 * 179.97438 * 14 13 12 16 16 C 1.38458 * 119.97492 * 359.97438 * 15 14 13 17 17 F 1.35104 * 120.02786 * 179.97438 * 16 15 14 18 18 C 1.38465 * 119.94675 * 0.24873 * 16 15 14 19 19 C 1.38196 * 119.97501 * 359.51590 * 18 16 15 20 20 H 0.97004 * 119.99741 * 359.97438 * 1 2 3 21 21 H 0.96702 * 114.00142 * 60.00100 * 11 9 7 22 22 H 1.09002 * 109.47296 * 54.99951 * 12 9 7 23 23 H 1.09001 * 109.47017 * 295.00457 * 12 9 7 24 24 H 1.08001 * 119.98900 * 359.97438 * 14 13 12 25 25 H 1.07996 * 120.01603 * 179.97438 * 15 14 13 26 26 H 1.08007 * 120.01049 * 179.72700 * 18 16 15 27 27 H 1.07993 * 119.98770 * 180.23077 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8920 11 8 0.4292 -2.5756 -1.1646 12 6 2.2453 -3.6620 0.0027 13 6 1.4960 -4.9635 0.1278 14 6 1.0732 -5.6288 -1.0079 15 6 0.3863 -6.8227 -0.8946 16 6 0.1221 -7.3526 0.3570 17 9 -0.5497 -8.5194 0.4691 18 6 0.5421 -6.6830 1.4939 19 6 1.2330 -5.4917 1.3779 20 1 -0.4850 0.8401 0.0004 21 1 0.9210 -2.5308 -1.9960 22 1 2.9295 -3.5544 0.8445 23 1 2.8116 -3.6567 -0.9286 24 1 1.2797 -5.2155 -1.9841 25 1 0.0558 -7.3421 -1.7818 26 1 0.3327 -7.0932 2.4708 27 1 1.5639 -4.9712 2.2644 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041200675.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:40 Heat of formation + Delta-G solvation = -85.515668 kcal Electronic energy + Delta-G solvation = -13220.358805 eV Core-core repulsion = 10664.062970 eV Total energy + Delta-G solvation = -2556.295835 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.61523 -38.83396 -35.80553 -32.17139 -31.71185 -30.77984 -27.94523 -25.02011 -22.68932 -21.83053 -20.25974 -17.37087 -17.01872 -16.00890 -15.32130 -15.04704 -14.63314 -14.28964 -13.80395 -13.56269 -13.17942 -13.01682 -12.77374 -11.83417 -11.40400 -11.15176 -11.02133 -10.86124 -10.62160 -10.48322 -10.04202 -9.18900 -8.77371 -8.60739 -8.43427 -7.83631 -6.03540 -4.22722 1.53879 1.58463 3.24575 3.33197 3.36060 3.97408 4.36640 4.57297 5.04307 5.14544 5.23314 5.38422 5.64211 5.68008 6.02745 6.19925 6.32362 6.40869 6.43066 6.53449 6.61037 6.84394 7.02609 7.27366 7.69119 7.81722 8.13707 8.80658 9.35711 9.55166 11.00318 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.072279 B = 0.006715 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.292602 B = 4168.833833 C = 4222.630581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.079 3.921 3 Si 0.889 3.111 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.574 4.574 8 H 0.057 0.943 9 C 0.236 3.764 10 H 0.056 0.944 11 O -0.562 6.562 12 C -0.112 4.112 13 C -0.060 4.060 14 C -0.081 4.081 15 C -0.153 4.153 16 C 0.072 3.928 17 F -0.150 7.150 18 C -0.154 4.154 19 C -0.096 4.096 20 H 0.260 0.740 21 H 0.343 0.657 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.779 -10.357 -0.071 10.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.612 4.612 8 H 0.076 0.924 9 C 0.178 3.822 10 H 0.074 0.926 11 O -0.364 6.364 12 C -0.150 4.150 13 C -0.060 4.060 14 C -0.099 4.099 15 C -0.172 4.172 16 C 0.053 3.947 17 F -0.129 7.129 18 C -0.172 4.172 19 C -0.114 4.114 20 H 0.070 0.930 21 H 0.186 0.814 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.147 0.853 25 H 0.146 0.854 26 H 0.146 0.854 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.103 -10.342 0.404 10.561 hybrid contribution 0.723 0.814 -0.295 1.128 sum 2.826 -9.528 0.109 9.939 Atomic orbital electron populations 1.70095 1.05959 1.26375 1.47008 1.25056 0.94689 0.99176 0.93814 0.86619 0.80212 0.83839 0.77718 1.19683 1.20873 1.20883 1.21725 0.93243 0.91431 1.54798 0.92440 1.19362 0.87685 0.88871 0.86279 0.92597 1.86591 1.38329 1.96251 1.15263 1.21597 0.98980 0.92352 1.02075 1.20279 0.97092 0.96146 0.92522 1.20897 0.96725 0.93209 0.99089 1.21064 1.02285 0.97995 0.95872 1.17646 0.98429 0.83865 0.94791 1.91442 1.78389 1.46043 1.97036 1.21039 1.01727 0.97047 0.97422 1.20952 0.98043 0.94541 0.97900 0.93001 0.81357 0.91140 0.91776 0.85273 0.85426 0.85419 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.15 12.84 55.43 0.71 -24.44 15 2 C 0.08 2.17 5.40 -17.82 -0.10 2.07 15 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.75 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 15 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 15 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.57 -15.30 8.76 -34.44 -0.30 -15.61 15 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 15 9 C 0.24 5.75 2.81 -27.88 -0.08 5.67 15 10 H 0.06 1.53 8.14 -51.93 -0.42 1.10 15 11 O -0.56 -13.98 12.23 -35.23 -0.43 -14.41 15 12 C -0.11 -2.16 4.97 -27.88 -0.14 -2.30 15 13 C -0.06 -1.06 4.97 -104.62 -0.52 -1.58 15 14 C -0.08 -1.32 9.40 -39.59 -0.37 -1.69 15 15 C -0.15 -2.34 10.03 -39.52 -0.40 -2.73 15 16 C 0.07 1.13 7.30 -39.42 -0.29 0.84 15 17 F -0.15 -2.32 17.27 2.25 0.04 -2.29 15 18 C -0.15 -2.33 10.03 -39.51 -0.40 -2.73 15 19 C -0.10 -1.57 9.70 -39.59 -0.38 -1.95 15 20 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 21 H 0.34 7.45 9.04 45.56 0.41 7.86 15 22 H 0.07 1.30 8.08 -51.93 -0.42 0.88 15 23 H 0.06 1.16 8.09 -51.93 -0.42 0.74 15 24 H 0.13 1.91 8.06 -52.49 -0.42 1.48 15 25 H 0.13 1.64 8.06 -52.49 -0.42 1.22 15 26 H 0.13 1.63 8.06 -52.48 -0.42 1.21 15 27 H 0.13 1.91 8.06 -52.49 -0.42 1.49 15 LS Contribution 248.18 15.07 3.74 3.74 Total: -1.00 -29.88 248.18 -6.01 -35.89 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -2.08 Total: 5.75 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -2.97 Total: -20.00 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.71 Total: -24.44 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.43 Total: -14.41 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.88 -6.01 -35.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041200675.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.625 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds