Wall clock time and date at job start Mon Mar 30 2020 02:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.46977 * 2 1 4 4 C 1.50697 * 109.47339 * 120.00367 * 2 1 3 5 5 H 1.08007 * 119.99639 * 119.99751 * 4 2 1 6 6 C 1.37872 * 119.99829 * 299.99974 * 4 2 1 7 7 N 1.31513 * 120.00380 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99846 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46798 * 89.99979 * 8 6 4 10 10 H 1.48502 * 109.46971 * 210.00030 * 8 6 4 11 11 H 1.48498 * 109.46986 * 329.99956 * 8 6 4 12 12 O 1.42903 * 109.46649 * 240.00258 * 2 1 3 13 13 C 1.35953 * 116.99856 * 84.67634 * 12 2 1 14 14 C 1.38709 * 120.02894 * 354.90632 * 13 12 2 15 15 C 1.38149 * 119.96378 * 180.29964 * 14 13 12 16 16 C 1.38450 * 120.03142 * 359.45208 * 15 14 13 17 17 F 1.35109 * 119.96736 * 180.27279 * 16 15 14 18 18 C 1.38445 * 120.06498 * 0.25654 * 16 15 14 19 19 C 1.38155 * 120.02987 * 0.02562 * 18 16 15 20 20 H 1.09003 * 109.47308 * 59.99885 * 1 2 3 21 21 H 1.09007 * 109.47134 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46897 * 299.99364 * 1 2 3 23 23 H 0.97000 * 120.00085 * 179.97438 * 7 6 4 24 24 H 1.07993 * 120.01777 * 0.02716 * 14 13 12 25 25 H 1.08008 * 119.98141 * 179.72427 * 15 14 13 26 26 H 1.07995 * 119.99062 * 180.02562 * 18 16 15 27 27 H 1.07997 * 120.02070 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1311 6 6 1.6993 -0.2395 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.6298 -0.5461 4.4122 10 1 1.3432 -0.9496 5.1119 11 1 2.4859 -2.5664 3.7117 12 8 2.0062 -0.6736 -1.1669 13 6 2.1059 0.0613 -2.3063 14 6 1.6541 1.3725 -2.3283 15 6 1.7504 2.1161 -3.4886 16 6 2.3079 1.5568 -4.6258 17 9 2.4065 2.2870 -5.7583 18 6 2.7649 0.2501 -4.6035 19 6 2.6645 -0.4978 -3.4462 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 0.7090 1.1612 3.4845 24 1 1.2232 1.8105 -1.4402 25 1 1.3945 3.1357 -3.5074 26 1 3.2000 -0.1848 -5.4911 27 1 3.0214 -1.5169 -3.4289 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041200696.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:52 Heat of formation + Delta-G solvation = -67.270605 kcal Electronic energy + Delta-G solvation = -13307.764159 eV Core-core repulsion = 10752.259489 eV Total energy + Delta-G solvation = -2555.504670 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.49518 -39.42753 -36.65730 -33.37676 -30.95656 -29.75763 -28.47138 -25.38082 -23.02070 -22.16634 -20.54780 -17.68692 -16.80933 -16.71912 -15.73060 -15.25632 -14.74462 -14.40880 -14.00654 -13.59561 -13.30042 -12.73801 -12.41776 -12.01227 -11.66653 -11.29079 -11.17057 -10.96537 -10.66361 -10.33269 -10.20254 -9.89275 -9.08061 -8.81161 -8.58023 -7.46485 -6.26776 -4.32585 1.53267 1.67481 3.20833 3.26879 3.31252 3.99887 4.10447 4.45215 4.66984 5.07264 5.09552 5.14290 5.56855 5.71077 6.02202 6.24396 6.44094 6.47609 6.54994 6.69333 6.77135 6.80489 7.10996 7.24366 7.58530 7.71937 8.03064 8.41733 8.78951 9.33667 10.81024 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.068116 B = 0.007003 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.967045 B = 3997.343103 C = 4181.648534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.206 3.794 3 H 0.035 0.965 4 C -0.518 4.518 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.310 6.310 13 C 0.151 3.849 14 C -0.187 4.187 15 C -0.111 4.111 16 C 0.029 3.971 17 F -0.152 7.152 18 C -0.115 4.115 19 C -0.146 4.146 20 H 0.018 0.982 21 H 0.040 0.960 22 H 0.098 0.902 23 H 0.266 0.734 24 H 0.145 0.855 25 H 0.130 0.870 26 H 0.132 0.868 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.145 0.745 -8.896 9.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.152 3.848 3 H 0.053 0.947 4 C -0.556 4.556 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.196 1.196 12 O -0.223 6.223 13 C 0.102 3.898 14 C -0.206 4.206 15 C -0.130 4.130 16 C 0.010 3.990 17 F -0.131 7.131 18 C -0.134 4.134 19 C -0.165 4.165 20 H 0.037 0.963 21 H 0.059 0.941 22 H 0.117 0.883 23 H 0.076 0.924 24 H 0.163 0.837 25 H 0.148 0.852 26 H 0.150 0.850 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.097 0.678 -8.722 8.817 hybrid contribution 0.138 0.018 0.702 0.715 sum 1.235 0.697 -8.020 8.144 Atomic orbital electron populations 1.22336 0.98046 1.00714 1.01310 1.20351 0.91397 0.93489 0.79544 0.94725 1.20980 1.32278 1.13548 0.88745 0.91259 1.24868 0.94807 0.95103 0.99101 1.69866 1.36136 1.22678 1.24274 0.86267 0.78558 0.79991 0.81327 1.20358 1.20934 1.19568 1.86192 1.79558 1.39619 1.16954 1.19294 0.92083 0.90147 0.88253 1.21430 1.05269 0.94558 0.99308 1.20901 0.99913 1.00498 0.91702 1.17474 1.07311 0.91018 0.83217 1.91428 1.94957 1.77334 1.49389 1.20799 1.01185 0.92617 0.98776 1.20288 1.04219 1.01168 0.90818 0.96316 0.94124 0.88343 0.92366 0.83714 0.85212 0.84972 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 8.94 37.16 0.33 -3.59 15 2 C 0.21 5.16 2.22 -27.88 -0.06 5.09 15 3 H 0.04 0.91 6.31 -51.93 -0.33 0.58 15 4 C -0.52 -14.10 8.89 -34.44 -0.31 -14.40 15 5 H 0.07 1.89 7.81 -52.48 -0.41 1.48 15 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 15 7 N -0.89 -24.20 11.32 55.43 0.63 -23.58 15 8 Si 0.91 20.63 29.54 -169.99 -5.02 15.60 15 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 12 O -0.31 -7.23 9.79 -19.59 -0.19 -7.42 15 13 C 0.15 2.99 6.60 -39.23 -0.26 2.73 15 14 C -0.19 -3.47 8.23 -39.44 -0.32 -3.80 15 15 C -0.11 -1.81 10.02 -39.54 -0.40 -2.20 15 16 C 0.03 0.46 7.30 -39.43 -0.29 0.17 15 17 F -0.15 -2.36 17.27 2.25 0.04 -2.32 15 18 C -0.11 -1.72 10.02 -39.54 -0.40 -2.12 15 19 C -0.15 -2.45 9.99 -39.44 -0.39 -2.84 15 20 H 0.02 0.38 6.90 -51.93 -0.36 0.02 15 21 H 0.04 0.95 8.14 -51.93 -0.42 0.52 15 22 H 0.10 2.49 6.07 -51.93 -0.32 2.18 15 23 H 0.27 6.85 8.31 -40.82 -0.34 6.51 15 24 H 0.15 2.80 5.43 -52.49 -0.28 2.51 15 25 H 0.13 1.80 8.06 -52.48 -0.42 1.38 15 26 H 0.13 1.59 8.06 -52.49 -0.42 1.17 15 27 H 0.13 2.01 8.06 -52.49 -0.42 1.59 15 LS Contribution 239.89 15.07 3.62 3.62 Total: -1.00 -27.30 239.89 -5.64 -32.94 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -2.52 Total: 0.52 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -2.19 Total: -19.37 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.63 Total: -23.58 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.19 Total: -7.42 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -27.30 -5.64 -32.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041200696.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.326 kcal (2) G-P(sol) polarization free energy of solvation -27.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds