Wall clock time and date at job start Mon Mar 30 2020 02:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37898 * 120.06567 * 2 1 4 4 C 1.32990 * 121.65744 * 179.69584 * 3 2 1 5 5 N 1.37895 * 121.65064 * 0.58466 * 4 3 2 6 6 C 1.46504 * 120.06309 * 179.68799 * 5 4 3 7 7 C 1.50697 * 109.46938 * 270.01935 * 6 5 4 8 8 H 1.08002 * 120.00185 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99839 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00406 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00191 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46875 * 59.99919 * 11 9 7 13 13 H 1.48496 * 109.47259 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47037 * 300.00573 * 11 9 7 15 15 C 1.35070 * 119.87445 * 359.70575 * 5 4 3 16 16 O 1.21586 * 120.76506 * 179.97438 * 15 5 4 17 17 C 1.35071 * 120.06344 * 180.26688 * 2 1 3 18 18 O 1.21584 * 120.76287 * 0.03253 * 17 2 1 19 19 H 1.09002 * 109.47391 * 269.72821 * 1 2 3 20 20 H 1.09001 * 109.46813 * 149.72878 * 1 2 3 21 21 H 1.09004 * 109.47041 * 29.73005 * 1 2 3 22 22 H 1.08002 * 119.16593 * 359.97438 * 3 2 1 23 23 H 1.07993 * 119.17631 * 180.26880 * 4 3 2 24 24 H 1.08994 * 109.47010 * 30.02275 * 6 5 4 25 25 H 1.09000 * 109.46796 * 150.02308 * 6 5 4 26 26 H 0.96995 * 120.00332 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1558 1.1934 0.0000 4 6 3.4852 1.2304 0.0060 5 7 4.2412 0.0771 0.0006 6 6 5.7040 0.1584 0.0006 7 6 6.2051 0.1933 -1.4202 8 1 5.5041 0.1587 -2.2411 9 6 7.5584 0.2702 -1.6721 10 7 8.4121 0.3128 -0.6726 11 14 8.1797 0.3141 -3.4333 12 1 7.6175 1.5008 -4.1270 13 1 9.6624 0.3964 -3.4332 14 1 7.7529 -0.9204 -4.1396 15 6 3.6305 -1.1276 -0.0051 16 8 4.2811 -2.1547 -0.0104 17 6 2.1416 -1.1690 -0.0054 18 8 1.5490 -2.2306 -0.0110 19 1 -0.3634 -0.0049 1.0276 20 1 -0.3633 -0.8876 -0.5181 21 1 -0.3633 0.8924 -0.5097 22 1 1.6033 2.1214 -0.0004 23 1 3.9853 2.1876 0.0102 24 1 6.0174 1.0646 0.5188 25 1 6.1162 -0.7126 0.5100 26 1 9.3642 0.3666 -0.8498 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061796993.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:55 Heat of formation + Delta-G solvation = -63.947021 kcal Electronic energy + Delta-G solvation = -13669.965047 eV Core-core repulsion = 11134.524460 eV Total energy + Delta-G solvation = -2535.440587 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.52079 -39.71648 -38.69291 -36.35358 -34.84887 -31.60386 -29.89139 -28.49344 -25.65656 -24.44279 -23.51557 -20.04965 -18.89108 -18.42639 -18.11752 -17.38996 -16.94804 -16.13756 -15.74863 -15.55555 -14.80053 -14.51973 -14.22130 -14.04745 -13.47571 -13.23396 -13.06773 -12.73208 -12.63466 -12.55679 -12.27756 -11.83318 -10.86929 -10.76322 -10.68911 -8.53044 -8.24225 -6.45429 0.19032 0.84787 1.37180 1.39289 1.42931 1.50290 1.94146 2.34663 2.47791 3.02070 3.22944 4.11272 4.30433 4.40558 4.58957 4.69082 4.87707 4.87826 5.04067 5.14215 5.56456 5.71053 5.79711 5.88355 6.31962 6.48164 6.60770 6.93837 7.25302 8.77886 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.048154 B = 0.008715 C = 0.008381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.332465 B = 3212.119975 C = 3340.084512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.501 5.501 3 C 0.009 3.991 4 C 0.017 3.983 5 N -0.494 5.494 6 C 0.243 3.757 7 C -0.554 4.554 8 H 0.055 0.945 9 C 0.017 3.983 10 N -0.921 5.921 11 Si 0.969 3.031 12 H -0.255 1.255 13 H -0.276 1.276 14 H -0.283 1.283 15 C 0.462 3.538 16 O -0.552 6.552 17 C 0.483 3.517 18 O -0.542 6.542 19 H 0.087 0.913 20 H 0.068 0.932 21 H 0.131 0.869 22 H 0.234 0.766 23 H 0.198 0.802 24 H 0.059 0.941 25 H 0.009 0.991 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.262 9.508 0.739 17.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.225 5.225 3 C -0.109 4.109 4 C -0.102 4.102 5 N -0.216 5.216 6 C 0.124 3.876 7 C -0.592 4.592 8 H 0.073 0.927 9 C -0.183 4.183 10 N -0.560 5.560 11 Si 0.793 3.207 12 H -0.179 1.179 13 H -0.201 1.201 14 H -0.209 1.209 15 C 0.248 3.752 16 O -0.428 6.428 17 C 0.269 3.731 18 O -0.418 6.418 19 H 0.105 0.895 20 H 0.087 0.913 21 H 0.149 0.851 22 H 0.250 0.750 23 H 0.214 0.786 24 H 0.077 0.923 25 H 0.027 0.973 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.042 8.292 0.797 16.327 hybrid contribution 0.914 -0.530 -0.668 1.250 sum -13.128 7.762 0.129 15.251 Atomic orbital electron populations 1.22348 0.74313 1.05878 1.04814 1.45645 1.10154 1.04506 1.62187 1.21860 0.90845 0.90115 1.08066 1.21914 0.91337 0.91362 1.05611 1.46096 1.10177 1.05265 1.60032 1.19341 0.72713 0.97963 0.97608 1.21499 0.92738 1.52788 0.92177 0.92719 1.25778 0.96531 0.93884 1.02126 1.70009 1.03151 1.49687 1.33121 0.85446 0.77384 0.78995 0.78887 1.17909 1.20121 1.20865 1.20810 0.89251 0.84474 0.80676 1.90780 1.66391 1.34836 1.50815 1.20231 0.87409 0.85222 0.80246 1.90760 1.69066 1.30794 1.51214 0.89455 0.91296 0.85123 0.74999 0.78561 0.92348 0.97293 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 10.44 127.77 1.33 2.37 15 2 N -0.50 -12.97 3.05 -664.99 -2.03 -15.00 15 3 C 0.01 0.18 10.25 82.57 0.85 1.02 15 4 C 0.02 0.48 10.25 82.57 0.85 1.33 15 5 N -0.49 -21.15 2.64 -645.67 -1.70 -22.85 15 6 C 0.24 12.55 5.16 85.63 0.44 13.00 15 7 C -0.55 -30.81 9.39 25.60 0.24 -30.57 15 8 H 0.05 3.04 7.81 -2.91 -0.02 3.02 15 9 C 0.02 0.96 5.46 84.65 0.46 1.42 15 10 N -0.92 -53.29 13.29 21.45 0.28 -53.01 15 11 Si 0.97 43.40 29.54 68.60 2.03 45.43 15 12 H -0.25 -10.55 7.11 99.48 0.71 -9.85 15 13 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 14 H -0.28 -12.97 7.11 99.48 0.71 -12.27 15 15 C 0.46 22.16 7.73 87.07 0.67 22.84 15 16 O -0.55 -32.35 16.67 10.93 0.18 -32.16 15 17 C 0.48 19.23 7.73 87.07 0.67 19.90 15 18 O -0.54 -24.59 16.67 10.93 0.18 -24.41 15 19 H 0.09 1.11 8.14 -2.39 -0.02 1.09 15 20 H 0.07 1.36 7.46 -2.39 -0.02 1.34 15 21 H 0.13 0.84 8.04 -2.38 -0.02 0.82 15 22 H 0.23 1.52 8.06 -2.91 -0.02 1.50 15 23 H 0.20 4.29 8.06 -2.91 -0.02 4.27 15 24 H 0.06 2.85 8.04 -2.39 -0.02 2.83 15 25 H 0.01 0.54 7.46 -2.39 -0.02 0.52 15 26 H 0.27 14.72 8.31 -92.71 -0.77 13.95 15 Total: -1.00 -80.34 240.96 5.65 -74.69 By element: Atomic # 1 Polarization: -5.18 SS G_CDS: 1.19 Total: -3.99 kcal Atomic # 6 Polarization: 25.79 SS G_CDS: 5.52 Total: 31.30 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -3.45 Total: -90.87 kcal Atomic # 8 Polarization: -56.93 SS G_CDS: 0.36 Total: -56.57 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -80.34 5.65 -74.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061796993.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.746 kcal (2) G-P(sol) polarization free energy of solvation -80.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds