Wall clock time and date at job start Mon Mar 30 2020 02:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99998 * 2 1 4 4 H 1.48500 * 109.46905 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47150 * 299.99638 * 3 2 1 6 6 H 1.48493 * 109.47415 * 59.99888 * 3 2 1 7 7 C 1.37879 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00653 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99645 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47295 * 179.97438 * 9 7 2 11 11 C 1.42895 * 114.00313 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47518 * 180.02562 * 11 10 9 13 13 C 1.38219 * 120.00966 * 359.97438 * 12 11 10 14 14 C 1.38227 * 120.02402 * 179.72409 * 13 12 11 15 15 C 1.38263 * 120.05156 * 0.30685 * 14 13 12 16 16 C 1.38177 * 120.02526 * 359.97438 * 15 14 13 17 17 C 1.38439 * 120.01637 * 180.29867 * 12 11 10 18 18 F 1.35105 * 120.02463 * 359.97438 * 17 12 11 19 19 H 0.96997 * 119.99967 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47462 * 59.99438 * 9 7 2 21 21 H 1.09001 * 109.47103 * 299.99736 * 9 7 2 22 22 H 1.08996 * 109.47394 * 59.99621 * 11 10 9 23 23 H 1.09005 * 109.46930 * 299.99874 * 11 10 9 24 24 H 1.08002 * 119.99072 * 0.02562 * 13 12 11 25 25 H 1.07999 * 119.97012 * 180.27779 * 14 13 12 26 26 H 1.08004 * 119.99046 * 179.97438 * 15 14 13 27 27 H 1.08000 * 120.01271 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0011 12 6 2.6317 -5.9399 0.0017 13 6 3.9665 -5.5811 0.0011 14 6 4.9451 -6.5574 0.0074 15 6 4.5901 -7.8936 0.0079 16 6 3.2563 -8.2547 0.0027 17 6 2.2751 -7.2776 -0.0039 18 9 0.9707 -7.6294 -0.0094 19 1 -0.4850 0.8400 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8903 22 1 0.9446 -4.9827 -0.8885 23 1 0.9453 -4.9821 0.8914 24 1 4.2451 -4.5377 0.0006 25 1 5.9878 -6.2760 0.0114 26 1 5.3555 -8.6556 0.0124 27 1 2.9793 -9.2985 0.0035 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068954362.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:56 Heat of formation + Delta-G solvation = -76.487903 kcal Electronic energy + Delta-G solvation = -12979.828052 eV Core-core repulsion = 10423.923690 eV Total energy + Delta-G solvation = -2555.904362 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.74930 -38.94177 -36.62964 -32.88958 -31.56644 -30.37717 -27.48394 -25.46100 -22.81056 -22.02727 -21.28213 -17.51509 -16.53211 -16.33533 -15.67332 -15.59482 -15.03011 -14.68522 -14.20583 -13.97138 -13.63165 -12.94380 -12.43403 -12.36821 -11.71922 -11.59516 -11.02376 -10.90029 -10.81436 -10.65889 -10.10152 -9.15085 -9.08529 -8.74899 -8.48660 -8.20145 -6.14494 -4.16749 1.26269 1.36517 3.27326 3.33826 3.39733 3.72810 4.25334 4.38631 4.62251 4.86860 5.13045 5.17854 5.22217 5.45197 5.62286 5.90375 5.94477 6.06910 6.20266 6.26221 6.56550 6.62610 7.03348 7.05338 7.37058 7.74860 8.09135 8.47631 8.95503 9.48152 10.97081 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.055194 B = 0.006369 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.176040 B = 4395.511090 C = 4882.236458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.068 0.932 9 C 0.194 3.806 10 O -0.392 6.392 11 C 0.101 3.899 12 C -0.108 4.108 13 C -0.065 4.065 14 C -0.134 4.134 15 C -0.103 4.103 16 C -0.159 4.159 17 C 0.094 3.906 18 F -0.141 7.141 19 H 0.264 0.736 20 H 0.008 0.992 21 H 0.008 0.992 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.148 0.852 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.744 -13.704 0.013 15.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.312 6.312 11 C 0.024 3.976 12 C -0.109 4.109 13 C -0.083 4.083 14 C -0.152 4.152 15 C -0.121 4.121 16 C -0.178 4.178 17 C 0.075 3.925 18 F -0.119 7.119 19 H 0.074 0.926 20 H 0.026 0.974 21 H 0.026 0.974 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.166 0.834 25 H 0.145 0.855 26 H 0.145 0.855 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.731 -13.557 0.013 15.136 hybrid contribution -0.293 0.742 -0.002 0.798 sum 6.438 -12.815 0.011 14.341 Atomic orbital electron populations 1.69970 1.06128 1.27155 1.50375 1.24958 0.94993 0.99495 0.95071 0.86265 0.79985 0.82499 0.77649 1.19450 1.20820 1.20813 1.21063 0.94096 0.89194 1.51033 0.91404 1.20263 0.88753 0.83248 0.95697 1.87788 1.35524 1.12522 1.95332 1.20900 0.92144 0.84279 1.00283 1.20040 0.96630 0.92143 1.02124 1.21130 0.90810 1.01274 0.95081 1.21275 0.99875 0.92734 1.01303 1.20955 0.95056 0.96498 0.99573 1.21004 0.92765 0.98876 1.05149 1.17502 0.78124 0.92564 1.04323 1.91476 1.33812 1.92691 1.93953 0.92627 0.97445 0.97433 0.92611 0.92613 0.83398 0.85456 0.85452 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.03 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 15 3 Si 0.91 21.65 29.54 -169.99 -5.02 16.63 15 4 H -0.27 -6.30 7.11 56.52 0.40 -5.89 15 5 H -0.28 -6.61 7.11 56.52 0.40 -6.20 15 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 7 C -0.52 -15.03 9.43 -34.44 -0.32 -15.35 15 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 15 9 C 0.19 5.32 5.69 36.01 0.20 5.52 15 10 O -0.39 -9.36 8.81 -35.23 -0.31 -9.67 15 11 C 0.10 2.00 5.91 36.00 0.21 2.21 15 12 C -0.11 -1.86 5.89 -104.56 -0.62 -2.48 15 13 C -0.07 -1.03 9.38 -39.59 -0.37 -1.41 15 14 C -0.13 -1.68 10.04 -39.58 -0.40 -2.08 15 15 C -0.10 -1.16 10.04 -39.59 -0.40 -1.55 15 16 C -0.16 -1.98 10.03 -39.52 -0.40 -2.38 15 17 C 0.09 1.44 7.25 -39.42 -0.29 1.16 15 18 F -0.14 -2.22 16.80 2.25 0.04 -2.18 15 19 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 20 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 15 21 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 15 22 H 0.06 1.08 8.14 -51.93 -0.42 0.65 15 23 H 0.06 1.08 8.14 -51.93 -0.42 0.65 15 24 H 0.15 2.54 7.01 -52.49 -0.37 2.17 15 25 H 0.13 1.27 8.06 -52.49 -0.42 0.84 15 26 H 0.13 1.02 8.06 -52.48 -0.42 0.60 15 27 H 0.13 1.30 8.06 -52.49 -0.42 0.88 15 LS Contribution 248.74 15.07 3.75 3.75 Total: -1.00 -30.56 248.74 -6.15 -36.70 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: -2.87 Total: -4.36 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -2.47 Total: -14.83 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.03 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.31 Total: -9.67 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.56 -6.15 -36.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068954362.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.783 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds