Wall clock time and date at job start Mon Mar 30 2020 02:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.32267 * 120.25127 * 2 1 4 4 C 1.31977 * 122.33673 * 180.02562 * 3 2 1 5 5 N 1.36647 * 118.71430 * 180.27483 * 4 3 2 6 6 N 1.36600 * 119.99653 * 359.73415 * 5 4 3 7 7 N 1.35947 * 122.57615 * 359.97438 * 4 3 2 8 8 H 0.96994 * 119.96801 * 180.02562 * 7 4 3 9 9 C 1.35159 * 120.05978 * 0.02562 * 7 4 3 10 10 O 1.21763 * 121.08422 * 179.97438 * 9 7 4 11 11 C 1.40678 * 120.24295 * 180.02562 * 2 1 3 12 12 C 1.40651 * 121.15716 * 359.96371 * 11 2 1 13 13 H 1.08001 * 119.99631 * 36.04130 * 12 11 2 14 14 C 1.39868 * 120.00293 * 216.04735 * 12 11 2 15 15 N 1.30985 * 119.99844 * 19.79585 * 14 12 11 16 16 Si 1.86798 * 120.00231 * 199.80496 * 14 12 11 17 17 H 1.48499 * 109.47304 * 59.99222 * 16 14 12 18 18 H 1.48490 * 109.47443 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46777 * 299.99895 * 16 14 12 20 20 H 1.08994 * 109.47050 * 269.96223 * 1 2 3 21 21 H 1.09000 * 109.46799 * 29.96341 * 1 2 3 22 22 H 1.09003 * 109.46831 * 149.95990 * 1 2 3 23 23 H 0.96993 * 120.00240 * 179.72658 * 5 4 3 24 24 H 1.00895 * 111.00658 * 56.04453 * 6 5 4 25 25 H 1.00903 * 111.00056 * 179.97438 * 6 5 4 26 26 H 0.97001 * 119.99738 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1734 1.1426 0.0000 4 6 3.4923 1.1906 -0.0005 5 7 4.1048 2.4121 0.0053 6 7 3.3534 3.5528 0.0059 7 7 4.2655 0.0724 -0.0005 8 1 5.2322 0.1518 -0.0005 9 6 3.6883 -1.1498 -0.0006 10 8 4.3628 -2.1635 -0.0011 11 6 2.2156 -1.2153 -0.0005 12 6 1.5423 -2.4502 -0.0003 13 1 0.6195 -2.5622 -0.5502 14 6 2.0678 -3.5332 0.7120 15 7 2.9370 -3.3271 1.6700 16 14 1.5302 -5.2733 0.2971 17 1 1.8726 -5.5735 -1.1164 18 1 2.2281 -6.2332 1.1896 19 1 0.0626 -5.3967 0.4877 20 1 -0.3633 -0.0007 1.0276 21 1 -0.3633 0.8903 -0.5133 22 1 -0.3633 -0.8897 -0.5145 23 1 5.0730 2.4692 0.0090 24 1 2.7123 3.5632 0.7850 25 1 3.9411 4.3730 0.0109 26 1 3.3017 -4.0782 2.1637 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072417224.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:03 Heat of formation + Delta-G solvation = 9.181438 kcal Electronic energy + Delta-G solvation = -13866.788870 eV Core-core repulsion = 11366.812122 eV Total energy + Delta-G solvation = -2499.976748 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.57218 -38.72341 -37.04017 -35.87540 -34.43602 -31.76662 -29.55914 -29.36697 -26.05237 -23.33983 -22.94795 -20.22755 -19.10770 -18.70487 -17.61651 -17.11098 -16.74052 -16.29419 -15.83504 -15.15790 -14.74910 -14.10289 -13.73169 -13.58461 -13.21938 -13.04178 -12.80434 -12.24570 -12.04119 -11.82263 -11.12322 -10.85798 -10.54040 -10.13540 -9.26015 -8.64982 -8.21386 -5.90331 0.59981 1.39056 1.48521 1.52039 1.62400 1.68246 2.29327 2.77147 2.93083 3.60355 3.85973 4.22984 4.65145 4.99126 5.14746 5.17223 5.26134 5.37304 5.73744 5.76867 5.90286 6.21595 6.37920 6.79229 6.85040 6.98299 7.28551 7.60200 8.01090 8.48623 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.049638 B = 0.010689 C = 0.009168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.948661 B = 2618.794515 C = 3053.416752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.027 4.027 3 N -0.539 5.539 4 C 0.515 3.485 5 N -0.560 5.560 6 N -0.587 5.587 7 N -0.639 5.639 8 H 0.403 0.597 9 C 0.514 3.486 10 O -0.565 6.565 11 C -0.076 4.076 12 C -0.466 4.466 13 H 0.089 0.911 14 C 0.036 3.964 15 N -0.812 5.812 16 Si 0.974 3.026 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.248 1.248 20 H 0.052 0.948 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.418 0.582 24 H 0.343 0.657 25 H 0.370 0.630 26 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.470 9.083 -0.822 9.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.148 4.148 3 N -0.270 5.270 4 C 0.162 3.838 5 N -0.296 5.296 6 N -0.216 5.216 7 N -0.289 5.289 8 H 0.241 0.759 9 C 0.311 3.689 10 O -0.444 6.444 11 C -0.085 4.085 12 C -0.497 4.497 13 H 0.107 0.893 14 C -0.180 4.180 15 N -0.438 5.438 16 Si 0.796 3.204 17 H -0.196 1.196 18 H -0.203 1.203 19 H -0.172 1.172 20 H 0.070 0.930 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.259 0.741 24 H 0.158 0.842 25 H 0.186 0.814 26 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.861 8.763 -1.327 8.905 hybrid contribution 1.916 -1.142 0.943 2.422 sum 2.777 7.621 -0.384 8.120 Atomic orbital electron populations 1.19990 0.88645 1.01029 1.00707 1.20943 0.96392 0.85951 1.11499 1.66817 1.02588 1.29721 1.27844 1.18186 0.86180 0.80003 0.99404 1.41571 1.06024 0.98346 1.83698 1.59802 1.16780 0.93997 1.51033 1.44064 1.11013 1.06222 1.67573 0.75921 1.19521 0.90652 0.81002 0.77762 1.90671 1.66273 1.34297 1.53138 1.20216 0.88834 0.95829 1.03631 1.19083 1.08700 0.94794 1.27154 0.89287 1.26582 0.93607 1.04953 0.92881 1.69849 1.23584 1.34905 1.15445 0.85382 0.79699 0.76606 0.78743 1.19563 1.20251 1.17168 0.92952 0.91891 0.92201 0.74095 0.84243 0.81360 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.95 9.84 71.24 0.70 -1.25 15 2 C -0.03 -1.32 6.90 43.09 0.30 -1.02 15 3 N -0.54 -24.10 9.51 -183.66 -1.75 -25.85 15 4 C 0.52 20.31 8.52 260.99 2.22 22.53 15 5 N -0.56 -15.21 6.55 -59.14 -0.39 -15.60 15 6 N -0.59 -13.61 9.98 37.02 0.37 -13.24 15 7 N -0.64 -27.06 5.30 -315.52 -1.67 -28.73 15 8 H 0.40 13.89 8.79 -92.71 -0.82 13.08 15 9 C 0.51 28.03 7.47 86.60 0.65 28.68 15 10 O -0.56 -34.13 15.09 -4.55 -0.07 -34.20 15 11 C -0.08 -4.21 5.55 -19.67 -0.11 -4.32 15 12 C -0.47 -26.26 8.21 23.25 0.19 -26.07 15 13 H 0.09 4.71 6.68 -2.91 -0.02 4.69 15 14 C 0.04 1.97 4.64 85.21 0.40 2.37 15 15 N -0.81 -47.61 11.16 21.82 0.24 -47.37 15 16 Si 0.97 42.44 29.60 68.60 2.03 44.47 15 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 15 19 H -0.25 -9.89 7.11 99.48 0.71 -9.18 15 20 H 0.05 2.13 8.14 -2.39 -0.02 2.11 15 21 H 0.06 2.36 8.14 -2.39 -0.02 2.34 15 22 H 0.06 2.49 6.49 -2.39 -0.02 2.48 15 23 H 0.42 8.10 8.82 -215.50 -1.90 6.20 15 24 H 0.34 8.36 8.95 -210.56 -1.88 6.48 15 25 H 0.37 5.16 9.21 -210.55 -1.94 3.22 15 26 H 0.28 15.22 8.30 -92.71 -0.77 14.45 15 Total: -1.00 -73.72 233.15 -2.15 -75.87 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: -5.26 Total: 23.73 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 4.34 Total: 20.92 kcal Atomic # 7 Polarization: -127.60 SS G_CDS: -3.19 Total: -130.79 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.07 Total: -34.20 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -73.72 -2.15 -75.87 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072417224.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.049 kcal (2) G-P(sol) polarization free energy of solvation -73.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds