Wall clock time and date at job start Mon Mar 30 2020 02:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.40050 * 125.95863 * 90.02495 * 10 9 7 12 12 C 1.31867 * 108.28634 * 179.97438 * 11 10 9 13 13 C 1.47719 * 125.96490 * 180.02562 * 12 11 10 14 14 N 1.34783 * 119.99978 * 0.02562 * 13 12 11 15 15 O 1.21573 * 120.00139 * 180.02562 * 13 12 11 16 16 C 1.41027 * 108.07237 * 359.97438 * 12 11 10 17 17 C 1.35821 * 107.77466 * 359.75549 * 16 12 11 18 18 N 1.39244 * 126.10857 * 180.23934 * 17 16 12 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 0.96997 * 120.00057 * 359.97438 * 14 13 12 23 23 H 0.96999 * 120.00066 * 180.02562 * 14 13 12 24 24 H 1.08004 * 126.11119 * 180.02562 * 16 12 11 25 25 H 0.97009 * 120.00058 * 180.17968 * 18 17 16 26 26 H 0.96996 * 120.00827 * 0.17924 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7367 -4.2431 1.1207 12 6 3.5529 -5.1966 0.7162 13 6 4.3250 -6.1054 1.5880 14 7 4.2269 -5.9986 2.9280 15 8 5.0489 -6.9496 1.0969 16 6 3.5592 -5.1980 -0.6941 17 6 2.7166 -4.2188 -1.1135 18 7 2.4330 -3.8914 -2.4368 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 3.6496 -5.3248 3.3199 23 1 4.7341 -6.5951 3.5005 24 1 4.1286 -5.8623 -1.3274 25 1 1.8159 -3.1700 -2.6365 26 1 2.8523 -4.3846 -3.1591 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082822322.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:46 Heat of formation + Delta-G solvation = 3.946638 kcal Electronic energy + Delta-G solvation = -13321.009738 eV Core-core repulsion = 10820.805992 eV Total energy + Delta-G solvation = -2500.203746 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.07758 -40.02706 -35.81129 -35.33514 -34.53260 -33.23406 -29.28837 -29.08221 -25.89536 -23.89356 -21.49324 -20.87965 -18.97758 -18.74614 -17.86906 -17.23852 -17.05172 -16.38045 -16.14192 -15.52848 -15.30202 -14.76207 -14.29800 -14.07158 -13.50527 -12.96153 -12.70927 -12.29220 -11.94088 -11.78616 -11.72072 -11.40255 -10.73555 -10.71900 -9.78224 -8.65508 -8.34495 -6.50349 0.55213 1.37560 1.39469 1.46990 1.56027 1.62746 2.34497 2.47043 2.50884 2.97207 3.12320 3.64423 4.31621 4.62341 4.88208 4.92631 4.97747 5.51862 5.60288 5.75055 5.81044 5.88431 6.24513 6.49007 6.60177 6.72602 7.14907 7.21538 7.27911 8.72573 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.039733 B = 0.008213 C = 0.007514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.528755 B = 3408.517578 C = 3725.399222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.276 1.276 7 C -0.552 4.552 8 H 0.049 0.951 9 C 0.273 3.727 10 N -0.366 5.366 11 N -0.291 5.291 12 C 0.019 3.981 13 C 0.614 3.386 14 N -0.819 5.819 15 O -0.571 6.571 16 C -0.320 4.320 17 C 0.360 3.640 18 N -0.837 5.837 19 H 0.273 0.727 20 H 0.032 0.968 21 H 0.050 0.950 22 H 0.416 0.584 23 H 0.418 0.582 24 H 0.160 0.840 25 H 0.407 0.593 26 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.946 -6.030 -0.439 7.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.794 3.206 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.201 1.201 7 C -0.590 4.590 8 H 0.068 0.932 9 C 0.154 3.846 10 N -0.156 5.156 11 N -0.120 5.120 12 C -0.147 4.147 13 C 0.397 3.603 14 N -0.383 5.383 15 O -0.448 6.448 16 C -0.356 4.356 17 C 0.131 3.869 18 N -0.389 5.389 19 H 0.082 0.918 20 H 0.050 0.950 21 H 0.068 0.932 22 H 0.247 0.753 23 H 0.251 0.749 24 H 0.177 0.823 25 H 0.237 0.763 26 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 3.620 -5.743 0.182 6.791 hybrid contribution 0.274 0.791 -0.579 1.018 sum 3.894 -4.951 -0.397 6.312 Atomic orbital electron populations 1.69997 1.07181 1.28783 1.49436 1.25660 0.95712 1.02440 0.93686 0.85337 0.78403 0.78611 0.78275 1.19995 1.19480 1.20132 1.21461 0.93149 0.90934 1.53497 0.93225 1.19261 0.86090 0.80709 0.98559 1.49197 1.36803 1.27916 1.01701 1.77437 1.15282 1.10441 1.08823 1.21830 1.00293 0.97846 0.94732 1.16912 0.79484 0.81150 0.82800 1.43472 1.49479 1.39905 1.05448 1.90762 1.41065 1.37199 1.75812 1.20505 1.12923 1.08596 0.93569 1.18222 0.93388 0.92007 0.83259 1.41459 1.54245 1.42580 1.00619 0.91758 0.95037 0.93221 0.75286 0.74891 0.82271 0.76339 0.74025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.25 13.29 21.45 0.28 -48.97 15 2 C 0.03 1.37 5.46 84.66 0.46 1.84 15 3 Si 0.97 41.36 29.54 68.60 2.03 43.39 15 4 H -0.28 -11.84 7.11 99.48 0.71 -11.13 15 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 15 6 H -0.28 -11.54 7.11 99.48 0.71 -10.83 15 7 C -0.55 -29.17 9.39 25.60 0.24 -28.93 15 8 H 0.05 2.74 7.81 -2.91 -0.02 2.72 15 9 C 0.27 13.37 6.01 85.64 0.51 13.88 15 10 N -0.37 -16.32 3.62 -348.61 -1.26 -17.58 15 11 N -0.29 -12.53 12.26 -48.45 -0.59 -13.12 15 12 C 0.02 0.74 7.09 42.33 0.30 1.04 15 13 C 0.61 21.26 8.10 86.75 0.70 21.97 15 14 N -0.82 -20.48 8.87 -175.68 -1.56 -22.04 15 15 O -0.57 -22.27 17.73 -3.94 -0.07 -22.34 15 16 C -0.32 -12.12 10.60 22.39 0.24 -11.89 15 17 C 0.36 13.90 7.97 131.11 1.05 14.94 15 18 N -0.84 -24.90 9.11 -55.27 -0.50 -25.40 15 19 H 0.27 13.75 8.31 -92.70 -0.77 12.98 15 20 H 0.03 1.68 8.14 -2.38 -0.02 1.66 15 21 H 0.05 2.39 7.48 -2.39 -0.02 2.37 15 22 H 0.42 9.79 8.52 -92.71 -0.79 9.00 15 23 H 0.42 7.82 8.93 -92.71 -0.83 6.99 15 24 H 0.16 5.37 8.06 -2.91 -0.02 5.34 15 25 H 0.41 12.22 8.08 -92.70 -0.75 11.47 15 26 H 0.43 9.38 8.95 -92.71 -0.83 8.55 15 Total: -1.00 -64.25 244.64 -0.11 -64.36 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -1.93 Total: 28.85 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 3.50 Total: 12.86 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -3.63 Total: -127.11 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.07 Total: -22.34 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -64.25 -0.11 -64.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082822322.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.303 kcal (2) G-P(sol) polarization free energy of solvation -64.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds