Wall clock time and date at job start Mon Mar 30 2020 02:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47401 * 2 1 4 4 C 1.53001 * 109.46809 * 120.00081 * 2 1 3 5 5 H 1.09000 * 109.47245 * 298.65451 * 4 2 1 6 6 C 1.50697 * 109.47435 * 58.65895 * 4 2 1 7 7 H 1.07997 * 119.99913 * 25.81348 * 6 4 2 8 8 C 1.37882 * 119.99958 * 205.82117 * 6 4 2 9 9 N 1.31512 * 119.99790 * 353.79503 * 8 6 4 10 10 Si 1.86799 * 119.99949 * 173.79872 * 8 6 4 11 11 H 1.48497 * 109.47268 * 179.97438 * 10 8 6 12 12 H 1.48504 * 109.46909 * 299.99930 * 10 8 6 13 13 H 1.48502 * 109.47319 * 59.99265 * 10 8 6 14 14 C 1.50699 * 109.47135 * 178.65749 * 4 2 1 15 15 C 1.33393 * 125.20261 * 119.71327 * 14 4 2 16 16 C 1.38427 * 114.92126 * 179.85825 * 15 14 4 17 17 C 1.33397 * 114.91942 * 0.43659 * 16 15 14 18 18 S 1.75886 * 109.59247 * 359.76726 * 17 16 15 19 19 H 1.08998 * 109.47337 * 297.28041 * 1 2 3 20 20 H 1.09001 * 109.47105 * 57.27249 * 1 2 3 21 21 H 1.08994 * 109.47386 * 177.27429 * 1 2 3 22 22 H 1.09002 * 109.47192 * 239.99525 * 2 1 3 23 23 H 1.09002 * 109.47103 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.46824 * 299.99753 * 3 2 1 25 25 H 1.08998 * 109.47378 * 60.00117 * 3 2 1 26 26 H 0.97003 * 120.00087 * 354.47272 * 9 8 6 27 27 H 1.07998 * 122.53826 * 0.02562 * 15 14 4 28 28 H 1.07994 * 122.54165 * 180.20434 * 16 15 14 29 29 H 1.07990 * 125.20138 * 179.74862 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6964 -0.1937 2.1391 6 6 1.5106 -2.1322 1.2660 7 1 1.2467 -2.6209 0.3398 8 6 1.3631 -2.7990 2.4638 9 7 1.7969 -2.2522 3.5785 10 14 0.5473 -4.4789 2.5033 11 1 0.5117 -4.9792 3.9010 12 1 -0.8386 -4.3685 1.9811 13 1 1.3204 -5.4247 1.6589 14 6 3.5465 -0.7502 1.2328 15 6 4.3362 -0.2082 2.1612 16 6 5.6932 -0.3632 1.9356 17 6 6.0055 -1.0233 0.8192 18 16 4.5327 -1.4972 -0.0174 19 1 -0.3634 0.4710 0.9133 20 1 -0.3633 0.5556 -0.8645 21 1 -0.3634 -1.0264 -0.0489 22 1 1.8933 -0.5139 -0.8900 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9562 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 2.2914 -1.4182 3.5492 27 1 3.9464 0.3100 3.0249 28 1 6.4422 0.0243 2.6101 29 1 7.0091 -1.2341 0.4808 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084335112.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:18 Heat of formation + Delta-G solvation = 4.488420 kcal Electronic energy + Delta-G solvation = -12080.389359 eV Core-core repulsion = 10094.209570 eV Total energy + Delta-G solvation = -1986.179789 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.53265 -35.47961 -32.52867 -29.30912 -26.81528 -25.86267 -23.36235 -22.03255 -19.40156 -18.29624 -17.12180 -15.89475 -14.72567 -13.91056 -13.74349 -13.41569 -13.01213 -12.21821 -11.95010 -11.82995 -11.55234 -11.36316 -11.21048 -10.86453 -10.64819 -10.25957 -10.14091 -10.10433 -9.87505 -9.39068 -8.75178 -8.47619 -7.60031 -7.51684 -6.38656 -4.12976 1.97954 2.58439 3.00366 3.42287 3.43712 3.61932 3.67626 4.50606 5.30086 5.68152 5.71894 5.82428 5.88714 6.05460 6.27523 6.35947 6.44213 6.51603 6.59393 6.73635 6.79259 6.95050 7.02099 7.15399 7.30027 7.36827 7.47196 8.10631 8.38362 8.80892 9.58690 10.98754 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.025656 B = 0.014719 C = 0.011328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.104979 B = 1901.879453 C = 2471.152658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.080 4.080 3 C -0.146 4.146 4 C 0.089 3.911 5 H 0.050 0.950 6 C -0.586 4.586 7 H 0.054 0.946 8 C 0.026 3.974 9 N -0.902 5.902 10 Si 1.061 2.939 11 H -0.283 1.283 12 H -0.286 1.286 13 H -0.287 1.287 14 C -0.076 4.076 15 C -0.201 4.201 16 C -0.117 4.117 17 C -0.264 4.264 18 S 0.072 5.928 19 H 0.045 0.955 20 H 0.032 0.968 21 H 0.065 0.935 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.274 0.726 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.927 3.762 -5.402 7.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.099 4.099 3 C -0.203 4.203 4 C 0.069 3.931 5 H 0.068 0.932 6 C -0.624 4.624 7 H 0.072 0.928 8 C -0.180 4.180 9 N -0.536 5.536 10 Si 0.889 3.111 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.214 1.214 14 C -0.194 4.194 15 C -0.228 4.228 16 C -0.149 4.149 17 C -0.399 4.399 18 S 0.334 5.666 19 H 0.064 0.936 20 H 0.051 0.949 21 H 0.084 0.916 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.140 0.860 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.130 1.793 -5.687 6.332 hybrid contribution 1.108 1.841 0.430 2.191 sum 3.237 3.634 -5.257 7.164 Atomic orbital electron populations 1.21640 0.95539 1.02007 0.99319 1.21089 0.95661 0.94158 0.98968 1.21898 1.00754 0.97399 1.00244 1.17829 0.83447 0.97292 0.94544 0.93185 1.21815 1.46747 0.98270 0.95586 0.92775 1.25784 0.96074 1.03888 0.92234 1.70745 1.33680 1.20439 1.28782 0.83660 0.76202 0.75134 0.76090 1.20786 1.21276 1.21351 1.25705 1.01999 0.96176 0.95556 1.19958 0.92458 1.08119 1.02294 1.20013 0.96347 1.01059 0.97443 1.25279 1.01245 1.10861 1.02506 1.83925 0.96592 1.58593 1.27482 0.93633 0.94937 0.91622 0.92635 0.93192 0.94040 0.93393 0.91465 0.85684 0.85985 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.87 37.16 0.33 -2.12 15 2 C -0.08 -1.63 2.43 -90.62 -0.22 -1.85 15 3 C -0.15 -2.60 8.96 37.16 0.33 -2.26 15 4 C 0.09 2.13 1.37 -92.92 -0.13 2.00 15 5 H 0.05 1.30 7.05 -51.93 -0.37 0.93 15 6 C -0.59 -15.48 6.97 -34.44 -0.24 -15.72 15 7 H 0.05 1.44 7.72 -52.49 -0.40 1.03 15 8 C 0.03 0.73 5.45 -17.82 -0.10 0.63 15 9 N -0.90 -26.45 13.56 55.43 0.75 -25.69 15 10 Si 1.06 24.72 29.91 -169.99 -5.08 19.64 15 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 12 H -0.29 -6.34 7.11 56.52 0.40 -5.93 15 13 H -0.29 -6.49 7.11 56.52 0.40 -6.09 15 14 C -0.08 -1.72 3.62 -36.00 -0.13 -1.86 15 15 C -0.20 -4.33 9.49 -41.21 -0.39 -4.72 15 16 C -0.12 -2.24 10.18 -41.20 -0.42 -2.66 15 17 C -0.26 -4.90 11.23 29.04 0.33 -4.57 15 18 S 0.07 1.48 22.98 -107.50 -2.47 -0.99 15 19 H 0.04 0.87 8.14 -51.93 -0.42 0.45 15 20 H 0.03 0.53 8.14 -51.93 -0.42 0.10 15 21 H 0.06 1.34 7.21 -51.93 -0.37 0.97 15 22 H 0.06 1.15 7.95 -51.93 -0.41 0.74 15 23 H 0.05 0.91 7.26 -51.93 -0.38 0.53 15 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.27 7.95 6.20 -40.82 -0.25 7.70 15 27 H 0.13 2.66 8.06 -52.49 -0.42 2.23 15 28 H 0.12 1.99 8.06 -52.49 -0.42 1.56 15 29 H 0.15 2.26 8.06 -52.49 -0.42 1.84 15 LS Contribution 256.48 15.07 3.87 3.87 Total: -1.00 -28.34 256.48 -7.52 -35.86 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -3.94 Total: 0.44 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: -0.64 Total: -33.12 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.75 Total: -25.69 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.08 Total: 19.64 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.47 Total: -0.99 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.34 -7.52 -35.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084335112.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.351 kcal (2) G-P(sol) polarization free energy of solvation -28.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds