Wall clock time and date at job start Mon Mar 30 2020 02:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47401 * 2 1 4 4 C 1.53001 * 109.46809 * 120.00081 * 2 1 3 5 5 H 1.09000 * 109.47245 * 298.65451 * 4 2 1 6 6 C 1.50697 * 109.47435 * 58.65895 * 4 2 1 7 7 H 1.07997 * 119.99913 * 25.81348 * 6 4 2 8 8 C 1.37882 * 119.99958 * 205.82117 * 6 4 2 9 9 N 1.31512 * 119.99790 * 353.79503 * 8 6 4 10 10 Si 1.86799 * 119.99949 * 173.79872 * 8 6 4 11 11 H 1.48497 * 109.47268 * 179.97438 * 10 8 6 12 12 H 1.48504 * 109.46909 * 299.99930 * 10 8 6 13 13 H 1.48502 * 109.47319 * 59.99265 * 10 8 6 14 14 C 1.50699 * 109.47135 * 178.65749 * 4 2 1 15 15 C 1.33393 * 125.20261 * 119.71327 * 14 4 2 16 16 C 1.38427 * 114.92126 * 179.85825 * 15 14 4 17 17 C 1.33397 * 114.91942 * 0.43659 * 16 15 14 18 18 S 1.75886 * 109.59247 * 359.76726 * 17 16 15 19 19 H 1.08998 * 109.47337 * 297.28041 * 1 2 3 20 20 H 1.09001 * 109.47105 * 57.27249 * 1 2 3 21 21 H 1.08994 * 109.47386 * 177.27429 * 1 2 3 22 22 H 1.09002 * 109.47192 * 239.99525 * 2 1 3 23 23 H 1.09002 * 109.47103 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.46824 * 299.99753 * 3 2 1 25 25 H 1.08998 * 109.47378 * 60.00117 * 3 2 1 26 26 H 0.97003 * 120.00087 * 354.47272 * 9 8 6 27 27 H 1.07998 * 122.53826 * 0.02562 * 15 14 4 28 28 H 1.07994 * 122.54165 * 180.20434 * 16 15 14 29 29 H 1.07990 * 125.20138 * 179.74862 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6964 -0.1937 2.1391 6 6 1.5106 -2.1322 1.2660 7 1 1.2467 -2.6209 0.3398 8 6 1.3631 -2.7990 2.4638 9 7 1.7969 -2.2522 3.5785 10 14 0.5473 -4.4789 2.5033 11 1 0.5117 -4.9792 3.9010 12 1 -0.8386 -4.3685 1.9811 13 1 1.3204 -5.4247 1.6589 14 6 3.5465 -0.7502 1.2328 15 6 4.3362 -0.2082 2.1612 16 6 5.6932 -0.3632 1.9356 17 6 6.0055 -1.0233 0.8192 18 16 4.5327 -1.4972 -0.0174 19 1 -0.3634 0.4710 0.9133 20 1 -0.3633 0.5556 -0.8645 21 1 -0.3634 -1.0264 -0.0489 22 1 1.8933 -0.5139 -0.8900 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9562 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 2.2914 -1.4182 3.5492 27 1 3.9464 0.3100 3.0249 28 1 6.4422 0.0243 2.6101 29 1 7.0091 -1.2341 0.4808 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084335112.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:18 Heat of formation + Delta-G solvation = -9.919873 kcal Electronic energy + Delta-G solvation = -12081.014149 eV Core-core repulsion = 10094.209570 eV Total energy + Delta-G solvation = -1986.804580 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.20881 -37.12396 -34.48125 -30.98624 -28.50464 -27.50139 -25.23759 -23.70021 -21.09080 -19.89839 -19.07612 -17.54607 -16.34695 -15.71723 -15.55128 -15.07106 -14.69110 -13.89079 -13.54241 -13.41631 -13.12765 -13.07582 -12.83538 -12.65848 -12.34767 -11.98310 -11.86271 -11.72725 -11.49366 -11.14350 -10.67052 -10.53484 -9.23957 -9.17580 -8.52441 -6.26861 0.38161 0.99013 1.38389 1.53388 1.59801 1.78048 2.05619 2.59018 3.23761 4.06767 4.27017 4.29286 4.32884 4.55721 4.76890 4.82796 4.87974 4.97470 4.99876 5.08226 5.19860 5.32951 5.40250 5.55324 5.61928 5.71188 5.77136 6.12371 6.27213 6.68340 7.51470 8.84710 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.025656 B = 0.014719 C = 0.011328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.104979 B = 1901.879453 C = 2471.152658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.080 4.080 3 C -0.136 4.136 4 C 0.090 3.910 5 H 0.017 0.983 6 C -0.583 4.583 7 H 0.047 0.953 8 C -0.023 4.023 9 N -0.935 5.935 10 Si 1.100 2.900 11 H -0.289 1.289 12 H -0.268 1.268 13 H -0.275 1.275 14 C -0.110 4.110 15 C -0.205 4.205 16 C -0.129 4.129 17 C -0.244 4.244 18 S 0.068 5.932 19 H 0.037 0.963 20 H 0.065 0.935 21 H 0.046 0.954 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.264 0.736 27 H 0.116 0.884 28 H 0.154 0.846 29 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.825 3.837 -6.631 8.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.099 4.099 3 C -0.194 4.194 4 C 0.070 3.930 5 H 0.035 0.965 6 C -0.621 4.621 7 H 0.066 0.934 8 C -0.223 4.223 9 N -0.572 5.572 10 Si 0.923 3.077 11 H -0.214 1.214 12 H -0.194 1.194 13 H -0.201 1.201 14 C -0.228 4.228 15 C -0.233 4.233 16 C -0.160 4.160 17 C -0.378 4.378 18 S 0.330 5.670 19 H 0.056 0.944 20 H 0.084 0.916 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.134 0.866 28 H 0.172 0.828 29 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.022 1.880 -6.941 7.800 hybrid contribution 0.896 1.876 0.762 2.214 sum 3.918 3.756 -6.178 8.224 Atomic orbital electron populations 1.21594 0.94747 1.01313 1.00448 1.21064 0.96373 0.95428 0.96990 1.21792 1.00314 0.95746 1.01504 1.17704 0.84683 0.95900 0.94731 0.96464 1.22050 1.45763 0.99375 0.94961 0.93423 1.26971 0.96472 1.06621 0.92235 1.70842 1.35836 1.20832 1.29682 0.83154 0.76575 0.72022 0.75936 1.21440 1.19361 1.20066 1.25481 1.01621 0.98350 0.97305 1.20176 0.93957 1.07625 1.01565 1.20260 0.95698 1.01544 0.98472 1.25730 1.01942 1.08812 1.01356 1.83840 0.97557 1.58563 1.27067 0.94372 0.91644 0.93450 0.92982 0.93774 0.91233 0.93592 0.92572 0.86563 0.82811 0.79677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.65 8.87 71.98 0.64 -4.02 15 2 C -0.08 -3.21 2.43 -10.79 -0.03 -3.24 15 3 C -0.14 -4.68 8.96 71.98 0.65 -4.04 15 4 C 0.09 4.37 1.37 -12.29 -0.02 4.35 15 5 H 0.02 0.94 7.05 -2.39 -0.02 0.92 15 6 C -0.58 -31.22 6.97 25.60 0.18 -31.04 15 7 H 0.05 2.55 7.72 -2.91 -0.02 2.53 15 8 C -0.02 -1.30 5.45 84.66 0.46 -0.84 15 9 N -0.94 -56.24 13.56 21.45 0.29 -55.95 15 10 Si 1.10 49.97 29.91 68.60 2.05 52.02 15 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 15 12 H -0.27 -11.29 7.11 99.48 0.71 -10.58 15 13 H -0.28 -11.84 7.11 99.48 0.71 -11.14 15 14 C -0.11 -4.97 3.62 24.59 0.09 -4.88 15 15 C -0.20 -8.80 9.49 21.22 0.20 -8.60 15 16 C -0.13 -4.65 10.18 21.22 0.22 -4.43 15 17 C -0.24 -8.28 11.23 66.72 0.75 -7.53 15 18 S 0.07 2.70 22.98 -56.49 -1.30 1.40 15 19 H 0.04 1.45 8.14 -2.39 -0.02 1.43 15 20 H 0.06 2.00 8.14 -2.39 -0.02 1.98 15 21 H 0.05 1.92 7.21 -2.39 -0.02 1.90 15 22 H 0.05 2.12 7.95 -2.39 -0.02 2.10 15 23 H 0.04 1.55 7.26 -2.39 -0.02 1.53 15 24 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 25 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 26 H 0.26 15.90 6.20 -92.71 -0.57 15.33 15 27 H 0.12 5.08 8.06 -2.91 -0.02 5.05 15 28 H 0.15 4.50 8.06 -2.91 -0.02 4.48 15 29 H 0.19 4.82 8.06 -2.92 -0.02 4.80 15 Total: -1.00 -61.02 256.48 5.49 -55.54 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 1.30 Total: 11.24 kcal Atomic # 6 Polarization: -67.39 SS G_CDS: 3.14 Total: -64.25 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.29 Total: -55.95 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.05 Total: 52.02 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.30 Total: 1.40 kcal Total: -61.02 5.49 -55.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084335112.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.616 kcal (2) G-P(sol) polarization free energy of solvation -61.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds