Wall clock time and date at job start Mon Mar 30 2020 02:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53010 * 109.47115 * 2 1 4 4 H 1.09004 * 109.46620 * 54.46557 * 3 2 1 5 5 C 1.50695 * 109.47027 * 174.46346 * 3 2 1 6 6 H 1.08003 * 119.99763 * 114.55196 * 5 3 2 7 7 C 1.37879 * 120.00312 * 294.55657 * 5 3 2 8 8 N 1.31512 * 119.99987 * 350.81964 * 7 5 3 9 9 Si 1.86804 * 120.00031 * 170.82760 * 7 5 3 10 10 H 1.48500 * 109.47012 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47353 * 119.99958 * 9 7 5 12 12 H 1.48504 * 109.46898 * 239.99630 * 9 7 5 13 13 C 1.50695 * 109.47118 * 294.46426 * 3 2 1 14 14 C 1.33390 * 125.20008 * 119.71283 * 13 3 2 15 15 C 1.38425 * 114.91870 * 179.86147 * 14 13 3 16 16 C 1.33395 * 114.92186 * 0.43533 * 15 14 13 17 17 C 1.50700 * 125.20405 * 179.75269 * 16 15 14 18 18 S 1.75882 * 125.20509 * 300.02438 * 13 3 2 19 19 H 1.09004 * 109.47460 * 295.67267 * 1 2 3 20 20 H 1.08999 * 109.47430 * 175.67131 * 1 2 3 21 21 H 1.08999 * 109.47596 * 55.66980 * 1 2 3 22 22 H 1.09000 * 109.47536 * 119.99517 * 2 1 3 23 23 H 1.09000 * 109.47307 * 240.00197 * 2 1 3 24 24 H 0.96997 * 120.00296 * 179.97438 * 8 7 5 25 25 H 1.07993 * 122.54502 * 0.02699 * 14 13 3 26 26 H 1.08004 * 122.54073 * 180.20769 * 15 14 13 27 27 H 1.08995 * 109.47035 * 179.97438 * 17 16 15 28 28 H 1.08994 * 109.46890 * 299.99641 * 17 16 15 29 29 H 1.08997 * 109.47386 * 59.99718 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5979 1.9842 0.8363 5 6 3.5406 1.4448 0.1371 6 1 4.1564 1.8067 -0.6731 7 6 4.1277 0.9847 1.2967 8 7 3.3846 0.7144 2.3475 9 14 5.9787 0.7456 1.3753 10 1 6.5817 1.1175 0.0702 11 1 6.5441 1.6059 2.4455 12 1 6.2818 -0.6775 1.6725 13 6 1.6527 2.1123 -1.2932 14 6 0.8827 3.1966 -1.3971 15 6 0.6649 3.6354 -2.6918 16 6 1.2504 2.9020 -3.6398 17 6 1.1626 3.1663 -5.1209 18 16 2.1403 1.5793 -2.8968 19 1 -0.3634 0.4452 0.9262 20 1 -0.3634 -1.0247 -0.0776 21 1 -0.3634 0.5795 -0.8486 22 1 1.8933 -0.5137 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.7975 0.3905 3.1632 25 1 0.4634 3.6960 -0.5363 26 1 0.0632 4.5034 -2.9175 27 1 1.7361 2.4117 -5.6592 28 1 0.1201 3.1242 -5.4362 29 1 1.5684 4.1542 -5.3384 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084335116.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:00 Heat of formation + Delta-G solvation = 5.232442 kcal Electronic energy + Delta-G solvation = -11732.873834 eV Core-core repulsion = 9746.726308 eV Total energy + Delta-G solvation = -1986.147526 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -37.45411 -34.92070 -31.91192 -30.85075 -27.94501 -25.30328 -23.04223 -22.07672 -19.99946 -18.09107 -16.58371 -15.54675 -14.87253 -14.24107 -13.62477 -13.27218 -12.95702 -12.73791 -12.29083 -11.95532 -11.53333 -11.46893 -11.22728 -10.86494 -10.79808 -10.55627 -10.14111 -9.97907 -9.78907 -9.46383 -9.10059 -8.38562 -7.68326 -7.52771 -6.08493 -4.11382 1.84195 2.42481 2.90064 3.27572 3.35975 3.40794 3.54447 4.41326 5.24146 5.37529 5.57900 5.76366 5.84056 6.03753 6.19915 6.21329 6.34097 6.42127 6.52108 6.84641 6.87984 6.99350 7.16669 7.22092 7.33977 7.64467 7.81945 7.91032 8.29681 8.90797 9.52081 10.99634 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.036461 B = 0.010432 C = 0.009119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.749725 B = 2683.281708 C = 3069.684805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C 0.102 3.898 4 H 0.053 0.947 5 C -0.514 4.514 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.889 3.111 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.282 1.282 13 C -0.085 4.085 14 C -0.191 4.191 15 C -0.126 4.126 16 C -0.230 4.230 17 C -0.070 4.070 18 S 0.084 5.916 19 H 0.046 0.954 20 H 0.034 0.966 21 H 0.041 0.959 22 H 0.079 0.921 23 H 0.037 0.963 24 H 0.262 0.738 25 H 0.129 0.871 26 H 0.123 0.877 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.410 1.987 -8.799 10.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C 0.081 3.919 4 H 0.071 0.929 5 C -0.553 4.553 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.717 3.283 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.208 1.208 13 C -0.203 4.203 14 C -0.219 4.219 15 C -0.157 4.157 16 C -0.346 4.346 17 C -0.128 4.128 18 S 0.348 5.652 19 H 0.065 0.935 20 H 0.054 0.946 21 H 0.060 0.940 22 H 0.098 0.902 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.147 0.853 26 H 0.141 0.859 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.527 0.750 -9.171 9.854 hybrid contribution 0.141 1.082 0.775 1.338 sum -3.386 1.831 -8.396 9.236 Atomic orbital electron populations 1.21840 0.98696 0.99383 1.00615 1.21572 0.92312 0.99150 1.01515 1.17638 0.96247 0.91489 0.86491 0.92884 1.21153 0.90183 1.42724 1.01205 0.92190 1.24933 0.98110 0.95292 0.95230 1.69965 1.35341 1.44830 1.02216 0.86570 0.85660 0.77903 0.78190 1.19584 1.21003 1.20832 1.25335 0.97784 0.98560 0.98612 1.19983 1.05159 0.99633 0.97137 1.19889 1.02490 1.01004 0.92327 1.24292 1.08234 1.02996 0.99121 1.20144 1.01697 1.01498 0.89504 1.84105 1.51775 1.29455 0.99904 0.93495 0.94640 0.93997 0.90220 0.94434 0.92868 0.85344 0.85904 0.92167 0.91685 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.80 37.15 0.36 -2.58 15 2 C -0.11 -2.49 5.26 -26.73 -0.14 -2.63 15 3 C 0.10 2.52 2.01 -92.92 -0.19 2.33 15 4 H 0.05 1.44 8.03 -51.93 -0.42 1.02 15 5 C -0.51 -13.99 8.38 -34.44 -0.29 -14.28 15 6 H 0.06 1.65 7.76 -52.48 -0.41 1.25 15 7 C 0.07 1.82 5.16 -17.82 -0.09 1.73 15 8 N -0.89 -24.93 12.15 55.43 0.67 -24.26 15 9 Si 0.89 21.16 29.55 -169.99 -5.02 16.13 15 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 13 C -0.09 -1.88 3.98 -36.01 -0.14 -2.02 15 14 C -0.19 -3.83 10.01 -41.21 -0.41 -4.24 15 15 C -0.13 -2.21 10.05 -41.21 -0.41 -2.62 15 16 C -0.23 -3.94 6.51 -36.00 -0.23 -4.18 15 17 C -0.07 -0.90 10.38 36.01 0.37 -0.53 15 18 S 0.08 1.66 22.85 -107.50 -2.46 -0.80 15 19 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 20 H 0.03 0.63 8.14 -51.93 -0.42 0.20 15 21 H 0.04 0.81 7.27 -51.93 -0.38 0.43 15 22 H 0.08 2.04 6.78 -51.93 -0.35 1.69 15 23 H 0.04 0.85 7.81 -51.93 -0.41 0.45 15 24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 25 H 0.13 2.45 8.06 -52.49 -0.42 2.02 15 26 H 0.12 1.82 8.06 -52.48 -0.42 1.39 15 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 LS Contribution 260.20 15.07 3.92 3.92 Total: -1.00 -27.92 260.20 -8.11 -36.03 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -4.05 Total: -2.01 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: -1.17 Total: -29.02 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.67 Total: -24.26 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.46 Total: -0.80 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.92 -8.11 -36.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084335116.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.264 kcal (2) G-P(sol) polarization free energy of solvation -27.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds