Wall clock time and date at job start Mon Mar 30 2020 02:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 C 1.50703 * 109.46801 * 184.99876 * 3 2 1 6 6 H 1.08000 * 120.00226 * 239.99505 * 5 3 2 7 7 C 1.37876 * 119.99741 * 60.00200 * 5 3 2 8 8 N 1.31511 * 120.00557 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99840 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47337 * 59.99624 * 9 7 5 11 11 H 1.48502 * 109.47220 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47168 * 299.99658 * 9 7 5 13 13 C 1.50697 * 109.47204 * 65.00067 * 3 2 1 14 14 C 1.33387 * 125.19934 * 239.71342 * 13 3 2 15 15 C 1.38426 * 114.91839 * 179.86234 * 14 13 3 16 16 C 1.33379 * 114.92027 * 0.43125 * 15 14 13 17 17 C 1.50706 * 125.20396 * 179.74958 * 16 15 14 18 18 S 1.75879 * 109.59704 * 359.77352 * 16 15 14 19 19 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 20 20 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 21 21 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 23 23 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 24 24 H 0.96999 * 120.00539 * 180.02562 * 8 7 5 25 25 H 1.08002 * 122.54089 * 0.02562 * 14 13 3 26 26 H 1.08003 * 122.54038 * 180.20945 * 15 14 13 27 27 H 1.08997 * 109.47155 * 179.97438 * 17 16 15 28 28 H 1.08991 * 109.47108 * 300.00276 * 17 16 15 29 29 H 1.09006 * 109.46882 * 60.00202 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8783 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8811 -1.3818 10 1 6.5975 0.1472 -0.2348 11 1 6.3978 0.2165 -2.6504 12 1 6.4995 2.2813 -1.3822 13 6 1.6413 2.1163 1.2877 14 6 0.8794 3.2072 1.3808 15 6 0.6432 3.6450 2.6726 16 6 1.2207 2.9150 3.6279 17 6 1.1219 3.1853 5.1072 18 16 2.1158 1.5891 2.8971 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3635 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.8293 -0.0619 -2.9495 25 1 0.4752 3.7092 0.5142 26 1 0.0401 4.5141 2.8902 27 1 1.6897 2.4318 5.6529 28 1 1.5270 4.1736 5.3238 29 1 0.0768 3.1455 5.4148 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084335119.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:02 Heat of formation + Delta-G solvation = 6.713987 kcal Electronic energy + Delta-G solvation = -11744.707243 eV Core-core repulsion = 9758.623961 eV Total energy + Delta-G solvation = -1986.083281 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.44990 -34.93183 -31.88217 -30.80564 -27.94419 -25.28428 -23.04212 -22.06754 -19.93063 -18.08315 -16.58489 -15.53914 -14.87384 -14.25920 -13.60067 -13.24937 -12.92729 -12.73205 -12.30144 -11.92940 -11.55697 -11.41143 -11.11798 -10.86483 -10.79951 -10.58759 -10.13653 -9.90533 -9.72453 -9.52476 -9.04693 -8.38701 -7.67794 -7.51810 -6.04956 -4.12783 1.84676 2.43123 2.90987 3.30653 3.34691 3.37841 3.54445 4.40717 5.24950 5.37759 5.58195 5.76569 5.84924 6.04522 6.24575 6.26303 6.35158 6.44979 6.55886 6.84725 6.93541 7.02313 7.20351 7.24156 7.37543 7.67351 7.85138 8.03090 8.32532 8.88987 9.52003 10.99856 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.036485 B = 0.010484 C = 0.009100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.258907 B = 2670.123664 C = 3076.181111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.104 3.896 4 H 0.046 0.954 5 C -0.513 4.513 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C -0.086 4.086 14 C -0.192 4.192 15 C -0.126 4.126 16 C -0.230 4.230 17 C -0.070 4.070 18 S 0.087 5.913 19 H 0.037 0.963 20 H 0.044 0.956 21 H 0.034 0.966 22 H 0.099 0.901 23 H 0.034 0.966 24 H 0.263 0.737 25 H 0.128 0.872 26 H 0.123 0.877 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.338 2.638 8.356 9.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.083 3.917 4 H 0.064 0.936 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.202 1.202 13 C -0.204 4.204 14 C -0.220 4.220 15 C -0.157 4.157 16 C -0.347 4.347 17 C -0.128 4.128 18 S 0.351 5.649 19 H 0.056 0.944 20 H 0.063 0.937 21 H 0.053 0.947 22 H 0.117 0.883 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.146 0.854 26 H 0.141 0.859 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.454 1.371 8.744 9.501 hybrid contribution 0.130 1.229 -0.764 1.453 sum -3.324 2.600 7.979 9.027 Atomic orbital electron populations 1.21837 0.99033 0.99284 1.00249 1.21646 0.91905 0.99051 1.02683 1.17622 0.95967 0.91757 0.86311 0.93592 1.21112 0.90282 1.38035 1.05732 0.92328 1.24932 0.98259 0.94988 0.95506 1.69853 1.35045 1.38261 1.09479 0.86619 0.85489 0.78379 0.77375 1.20120 1.21201 1.20174 1.25356 0.97935 0.98381 0.98682 1.19978 1.05339 0.99512 0.97183 1.19880 1.02530 1.01052 0.92279 1.24301 1.08219 1.03081 0.99118 1.20145 1.01691 1.01464 0.89540 1.84125 1.51631 1.29275 0.99900 0.94372 0.93666 0.94692 0.88265 0.94715 0.92745 0.85390 0.85928 0.92162 0.91662 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.73 37.16 0.36 -2.61 15 2 C -0.11 -2.71 5.21 -26.73 -0.14 -2.85 15 3 C 0.10 2.58 2.15 -92.92 -0.20 2.38 15 4 H 0.05 1.24 8.09 -51.93 -0.42 0.82 15 5 C -0.51 -13.97 8.46 -34.44 -0.29 -14.26 15 6 H 0.06 1.61 7.74 -52.49 -0.41 1.20 15 7 C 0.06 1.77 5.29 -17.82 -0.09 1.67 15 8 N -0.89 -24.79 11.29 55.43 0.63 -24.16 15 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 15 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 13 C -0.09 -1.90 4.02 -36.00 -0.14 -2.04 15 14 C -0.19 -3.85 10.01 -41.21 -0.41 -4.27 15 15 C -0.13 -2.22 10.05 -41.21 -0.41 -2.63 15 16 C -0.23 -3.97 6.51 -36.00 -0.23 -4.21 15 17 C -0.07 -0.91 10.38 36.01 0.37 -0.53 15 18 S 0.09 1.73 22.87 -107.50 -2.46 -0.73 15 19 H 0.04 0.74 7.38 -51.93 -0.38 0.36 15 20 H 0.04 0.90 8.14 -51.93 -0.42 0.48 15 21 H 0.03 0.63 8.14 -51.93 -0.42 0.21 15 22 H 0.10 2.60 5.95 -51.93 -0.31 2.29 15 23 H 0.03 0.81 7.83 -51.93 -0.41 0.41 15 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 25 H 0.13 2.43 8.06 -52.49 -0.42 2.01 15 26 H 0.12 1.82 8.06 -52.48 -0.42 1.39 15 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 LS Contribution 258.95 15.07 3.90 3.90 Total: -1.00 -27.70 258.95 -8.17 -35.87 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -4.02 Total: -1.68 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: -1.20 Total: -29.35 kcal Atomic # 7 Polarization: -24.79 SS G_CDS: 0.63 Total: -24.16 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.46 Total: -0.73 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.70 -8.17 -35.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084335119.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.584 kcal (2) G-P(sol) polarization free energy of solvation -27.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds