Wall clock time and date at job start Mon Mar 30 2020 02:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 C 1.50703 * 109.46801 * 184.99876 * 3 2 1 6 6 H 1.08000 * 120.00226 * 239.99505 * 5 3 2 7 7 C 1.37876 * 119.99741 * 60.00200 * 5 3 2 8 8 N 1.31511 * 120.00557 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99840 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47337 * 59.99624 * 9 7 5 11 11 H 1.48502 * 109.47220 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47168 * 299.99658 * 9 7 5 13 13 C 1.50697 * 109.47204 * 65.00067 * 3 2 1 14 14 C 1.33387 * 125.19934 * 239.71342 * 13 3 2 15 15 C 1.38426 * 114.91839 * 179.86234 * 14 13 3 16 16 C 1.33379 * 114.92027 * 0.43125 * 15 14 13 17 17 C 1.50706 * 125.20396 * 179.74958 * 16 15 14 18 18 S 1.75879 * 109.59704 * 359.77352 * 16 15 14 19 19 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 20 20 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 21 21 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 23 23 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 24 24 H 0.96999 * 120.00539 * 180.02562 * 8 7 5 25 25 H 1.08002 * 122.54089 * 0.02562 * 14 13 3 26 26 H 1.08003 * 122.54038 * 180.20945 * 15 14 13 27 27 H 1.08997 * 109.47155 * 179.97438 * 17 16 15 28 28 H 1.08991 * 109.47108 * 300.00276 * 17 16 15 29 29 H 1.09006 * 109.46882 * 60.00202 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8783 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8811 -1.3818 10 1 6.5975 0.1472 -0.2348 11 1 6.3978 0.2165 -2.6504 12 1 6.4995 2.2813 -1.3822 13 6 1.6413 2.1163 1.2877 14 6 0.8794 3.2072 1.3808 15 6 0.6432 3.6450 2.6726 16 6 1.2207 2.9150 3.6279 17 6 1.1219 3.1853 5.1072 18 16 2.1158 1.5891 2.8971 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3635 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.8293 -0.0619 -2.9495 25 1 0.4752 3.7092 0.5142 26 1 0.0401 4.5141 2.8902 27 1 1.6897 2.4318 5.6529 28 1 1.5270 4.1736 5.3238 29 1 0.0768 3.1455 5.4148 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084335119.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:02 Heat of formation + Delta-G solvation = -7.016889 kcal Electronic energy + Delta-G solvation = -11745.302658 eV Core-core repulsion = 9758.623961 eV Total energy + Delta-G solvation = -1986.678697 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.99635 -36.71387 -33.80465 -32.24276 -29.67722 -26.92501 -24.82765 -23.56873 -21.74170 -19.61136 -18.55520 -17.20442 -16.63811 -15.94222 -15.12236 -14.84524 -14.51679 -14.08043 -13.79071 -13.62710 -13.14689 -13.02011 -12.76431 -12.66577 -12.49982 -12.23690 -11.88551 -11.68301 -11.44787 -11.36150 -10.97740 -10.45301 -9.21393 -9.05119 -8.11592 -6.26936 0.35530 0.94044 1.38413 1.40850 1.41751 1.49536 2.04055 2.42490 3.14644 4.14582 4.31139 4.52208 4.55395 4.58628 4.74909 4.84245 4.87858 4.92337 5.11184 5.20148 5.26337 5.35637 5.46911 5.59430 5.63840 5.78841 5.91141 6.04543 6.31954 6.79816 7.40622 8.91360 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.036485 B = 0.010484 C = 0.009100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.258907 B = 2670.123664 C = 3076.181111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 C 0.107 3.893 4 H 0.013 0.987 5 C -0.530 4.530 6 H 0.049 0.951 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.273 1.273 13 C -0.129 4.129 14 C -0.184 4.184 15 C -0.139 4.139 16 C -0.206 4.206 17 C -0.071 4.071 18 S 0.065 5.935 19 H 0.044 0.956 20 H 0.041 0.959 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.029 0.971 24 H 0.263 0.737 25 H 0.131 0.869 26 H 0.158 0.842 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.732 3.493 10.194 11.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.147 4.147 3 C 0.087 3.913 4 H 0.031 0.969 5 C -0.569 4.569 6 H 0.067 0.933 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.777 3.223 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.198 1.198 13 C -0.247 4.247 14 C -0.213 4.213 15 C -0.169 4.169 16 C -0.323 4.323 17 C -0.130 4.130 18 S 0.327 5.673 19 H 0.064 0.936 20 H 0.061 0.939 21 H 0.074 0.926 22 H 0.088 0.912 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.148 0.852 26 H 0.176 0.824 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.852 2.226 10.583 11.480 hybrid contribution 0.208 1.022 -1.263 1.638 sum -3.644 3.248 9.319 10.520 Atomic orbital electron populations 1.21693 0.96385 1.00695 1.00415 1.21478 0.94268 0.98107 1.00836 1.17364 0.94595 0.92225 0.87076 0.96853 1.21383 0.91868 1.37996 1.05624 0.93306 1.25655 1.02347 0.94703 0.95254 1.69976 1.36545 1.38743 1.09800 0.85706 0.80618 0.78423 0.77544 1.19652 1.20526 1.19847 1.25012 1.00900 1.00176 0.98578 1.20256 1.03848 0.98377 0.98779 1.20127 1.03402 1.02395 0.90930 1.24863 1.05510 1.00620 1.01305 1.20336 1.03622 1.02805 0.86213 1.84095 1.52839 1.31243 0.99081 0.93646 0.93939 0.92607 0.91171 0.95228 0.92725 0.85163 0.82442 0.91403 0.89588 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.44 9.73 71.98 0.70 -4.74 15 2 C -0.11 -5.28 5.21 30.59 0.16 -5.12 15 3 C 0.11 5.53 2.15 -12.29 -0.03 5.50 15 4 H 0.01 0.76 8.09 -2.39 -0.02 0.74 15 5 C -0.53 -29.68 8.46 25.60 0.22 -29.47 15 6 H 0.05 2.75 7.74 -2.91 -0.02 2.73 15 7 C 0.02 1.10 5.29 84.65 0.45 1.54 15 8 N -0.91 -52.24 11.29 21.45 0.24 -51.99 15 9 Si 0.95 43.89 29.54 68.60 2.03 45.92 15 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 15 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15 12 H -0.27 -12.37 7.11 99.48 0.71 -11.67 15 13 C -0.13 -5.75 4.02 24.59 0.10 -5.65 15 14 C -0.18 -7.20 10.01 21.22 0.21 -6.99 15 15 C -0.14 -4.47 10.05 21.21 0.21 -4.26 15 16 C -0.21 -6.48 6.51 24.59 0.16 -6.32 15 17 C -0.07 -1.54 10.38 71.24 0.74 -0.80 15 18 S 0.06 2.51 22.87 -56.49 -1.29 1.22 15 19 H 0.04 1.75 7.38 -2.39 -0.02 1.73 15 20 H 0.04 1.70 8.14 -2.39 -0.02 1.68 15 21 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.07 3.81 5.95 -2.39 -0.01 3.79 15 23 H 0.03 1.42 7.83 -2.39 -0.02 1.40 15 24 H 0.26 14.36 8.31 -92.71 -0.77 13.59 15 25 H 0.13 4.91 8.06 -2.91 -0.02 4.88 15 26 H 0.16 3.97 8.06 -2.91 -0.02 3.95 15 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 15 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 15 29 H 0.09 1.58 8.14 -2.38 -0.02 1.56 15 Total: -1.00 -60.23 258.95 5.01 -55.21 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 1.11 Total: 5.94 kcal Atomic # 6 Polarization: -59.22 SS G_CDS: 2.92 Total: -56.30 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.24 Total: -51.99 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.29 Total: 1.22 kcal Total: -60.23 5.01 -55.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084335119.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.197 kcal (2) G-P(sol) polarization free energy of solvation -60.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds