Wall clock time and date at job start Mon Mar 30 2020 02:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46935 * 2 1 4 4 H 1.09002 * 109.46815 * 54.47488 * 3 2 1 5 5 C 1.50704 * 109.46903 * 174.46941 * 3 2 1 6 6 H 1.08000 * 119.99587 * 114.55610 * 5 3 2 7 7 C 1.37879 * 119.99967 * 294.56052 * 5 3 2 8 8 N 1.31520 * 119.99914 * 350.81995 * 7 5 3 9 9 Si 1.86799 * 119.99894 * 170.82547 * 7 5 3 10 10 H 1.48502 * 109.47094 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47175 * 119.99605 * 9 7 5 12 12 H 1.48497 * 109.47091 * 239.99898 * 9 7 5 13 13 C 1.50690 * 109.47589 * 294.47274 * 3 2 1 14 14 S 1.75891 * 125.20274 * 300.02373 * 13 3 2 15 15 C 1.75890 * 90.97087 * 179.97438 * 14 13 3 16 16 C 1.33391 * 109.59234 * 0.02562 * 15 14 13 17 17 C 1.33391 * 125.20558 * 119.71748 * 13 3 2 18 18 C 1.50695 * 122.53530 * 0.02562 * 17 13 3 19 19 H 1.09003 * 109.47587 * 55.67073 * 1 2 3 20 20 H 1.09006 * 109.46680 * 295.66730 * 1 2 3 21 21 H 1.09000 * 109.47041 * 175.67280 * 1 2 3 22 22 H 1.08999 * 109.47546 * 120.01023 * 2 1 3 23 23 H 1.09001 * 109.46682 * 240.00942 * 2 1 3 24 24 H 0.96995 * 119.99425 * 180.02562 * 8 7 5 25 25 H 1.07993 * 125.20215 * 179.97438 * 15 14 13 26 26 H 1.07995 * 122.53662 * 179.97438 * 16 15 14 27 27 H 1.08994 * 109.47626 * 90.00053 * 18 17 13 28 28 H 1.09006 * 109.47043 * 210.00017 * 18 17 13 29 29 H 1.08995 * 109.47335 * 329.99677 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9841 0.8364 5 6 3.5408 1.4447 0.1369 6 1 4.1563 1.8067 -0.6733 7 6 4.1279 0.9846 1.2965 8 7 3.3847 0.7141 2.3474 9 14 5.9788 0.7453 1.3749 10 1 6.5818 1.1174 0.0698 11 1 6.5442 1.6057 2.4451 12 1 6.2819 -0.6777 1.6719 13 6 1.6525 2.1124 -1.2930 14 16 2.1400 1.5795 -2.8968 15 6 1.2504 2.9026 -3.6396 16 6 0.6655 3.6362 -2.6914 17 6 0.8827 3.1968 -1.3968 18 6 0.2978 3.8935 -0.1954 19 1 -0.3634 0.5795 -0.8487 20 1 -0.3633 0.4452 0.9263 21 1 -0.3633 -1.0247 -0.0775 22 1 1.8934 -0.5140 0.8899 23 1 1.8933 -0.5137 -0.8901 24 1 3.7979 0.3908 3.1632 25 1 1.1881 3.0925 -4.7008 26 1 0.0645 4.5047 -2.9169 27 1 0.9906 4.6591 0.1536 28 1 -0.6491 4.3583 -0.4702 29 1 0.1287 3.1670 0.5993 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084335121.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:03 Heat of formation + Delta-G solvation = -6.606206 kcal Electronic energy + Delta-G solvation = -11983.457695 eV Core-core repulsion = 9996.796807 eV Total energy + Delta-G solvation = -1986.660888 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.36873 -36.50198 -33.73090 -31.49261 -29.81759 -27.41022 -24.95615 -23.57605 -21.69920 -19.15491 -18.51028 -17.51441 -16.48306 -15.99980 -15.20276 -14.89817 -14.39082 -14.13745 -13.74912 -13.33615 -13.24697 -12.87762 -12.77511 -12.57752 -12.42016 -12.37995 -11.91002 -11.71140 -11.46767 -11.25235 -10.99812 -10.42037 -9.19373 -9.01961 -8.14550 -6.23298 0.40275 1.01516 1.37588 1.40734 1.43820 1.51706 2.02695 2.43011 3.15203 4.25193 4.29377 4.51990 4.56512 4.67414 4.72426 4.78374 4.91240 4.97535 5.13006 5.22644 5.28824 5.32803 5.44189 5.62534 5.72393 5.82951 5.93276 6.00865 6.32598 6.84284 7.42390 8.92449 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.032578 B = 0.011670 C = 0.010697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.277980 B = 2398.779183 C = 2616.979543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 C 0.107 3.893 4 H 0.030 0.970 5 C -0.527 4.527 6 H 0.047 0.953 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.279 1.279 12 H -0.277 1.277 13 C -0.131 4.131 14 S 0.053 5.947 15 C -0.234 4.234 16 C -0.125 4.125 17 C -0.158 4.158 18 C -0.081 4.081 19 H 0.047 0.953 20 H 0.043 0.957 21 H 0.056 0.944 22 H 0.048 0.952 23 H 0.033 0.967 24 H 0.263 0.737 25 H 0.187 0.813 26 H 0.161 0.839 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.475 3.242 -8.031 10.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.141 4.141 3 C 0.087 3.913 4 H 0.048 0.952 5 C -0.565 4.565 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.771 3.229 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.203 1.203 13 C -0.248 4.248 14 S 0.317 5.683 15 C -0.369 4.369 16 C -0.156 4.156 17 C -0.169 4.169 18 C -0.140 4.140 19 H 0.066 0.934 20 H 0.062 0.938 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.204 0.796 26 H 0.178 0.822 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.579 1.988 -8.445 9.809 hybrid contribution 0.356 0.838 0.939 1.307 sum -4.223 2.826 -7.506 9.064 Atomic orbital electron populations 1.21694 0.96060 1.00814 1.00659 1.21432 0.94659 0.98325 0.99670 1.17374 0.94483 0.91870 0.87580 0.95222 1.21420 0.91993 1.42352 1.00761 0.93453 1.25614 1.01897 0.95248 0.95045 1.70062 1.36785 1.45672 1.02574 0.85698 0.81173 0.77963 0.78073 1.19503 1.20526 1.20291 1.24902 1.00979 1.00353 0.98542 1.84129 1.53021 1.31739 0.99449 1.25755 1.06252 1.00828 1.04020 1.20198 1.02629 1.02016 0.90750 1.19168 1.02920 0.97837 0.96964 1.20400 1.00342 0.99151 0.94126 0.93357 0.93814 0.92539 0.93329 0.94788 0.92815 0.79586 0.82166 0.92310 0.89691 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 9.80 71.98 0.71 -4.59 15 2 C -0.10 -4.85 5.26 30.59 0.16 -4.69 15 3 C 0.11 5.36 1.86 -12.29 -0.02 5.34 15 4 H 0.03 1.64 6.21 -2.39 -0.01 1.62 15 5 C -0.53 -29.22 8.38 25.60 0.21 -29.00 15 6 H 0.05 2.67 7.76 -2.91 -0.02 2.65 15 7 C 0.02 1.19 5.16 84.65 0.44 1.63 15 8 N -0.91 -52.30 12.15 21.45 0.26 -52.04 15 9 Si 0.95 43.90 29.55 68.60 2.03 45.93 15 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 15 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 13 C -0.13 -5.66 3.97 24.59 0.10 -5.56 15 14 S 0.05 2.01 22.87 -56.49 -1.29 0.71 15 15 C -0.23 -7.12 11.23 66.72 0.75 -6.37 15 16 C -0.13 -3.90 9.98 21.22 0.21 -3.69 15 17 C -0.16 -5.96 5.80 -20.92 -0.12 -6.08 15 18 C -0.08 -2.75 9.70 71.23 0.69 -2.06 15 19 H 0.05 1.81 7.27 -2.39 -0.02 1.80 15 20 H 0.04 1.71 8.14 -2.38 -0.02 1.69 15 21 H 0.06 1.94 8.14 -2.39 -0.02 1.92 15 22 H 0.05 2.56 6.78 -2.39 -0.02 2.54 15 23 H 0.03 1.58 7.81 -2.39 -0.02 1.56 15 24 H 0.26 14.29 8.31 -92.71 -0.77 13.52 15 25 H 0.19 4.23 8.06 -2.91 -0.02 4.21 15 26 H 0.16 3.83 8.06 -2.91 -0.02 3.80 15 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 28 H 0.08 2.25 8.13 -2.38 -0.02 2.23 15 29 H 0.05 1.86 6.66 -2.39 -0.02 1.85 15 Total: -1.00 -59.89 256.50 5.24 -54.65 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.12 Total: 5.82 kcal Atomic # 6 Polarization: -58.20 SS G_CDS: 3.12 Total: -55.08 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.26 Total: -52.04 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.29 Total: 0.71 kcal Total: -59.89 5.24 -54.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084335121.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.045 kcal (2) G-P(sol) polarization free energy of solvation -59.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds