Wall clock time and date at job start Mon Mar 30 2020 02:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46989 * 2 1 4 4 H 1.08998 * 109.47229 * 305.00255 * 3 2 1 5 5 C 1.50700 * 109.46797 * 184.99945 * 3 2 1 6 6 H 1.07992 * 120.00115 * 240.00082 * 5 3 2 7 7 C 1.37884 * 119.99726 * 60.00710 * 5 3 2 8 8 N 1.31506 * 120.00124 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47142 * 59.99335 * 9 7 5 11 11 H 1.48497 * 109.47096 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46765 * 299.99947 * 9 7 5 13 13 C 1.50697 * 109.46881 * 65.00633 * 3 2 1 14 14 S 1.75887 * 125.20789 * 60.13390 * 13 3 2 15 15 C 1.75883 * 90.97233 * 180.18110 * 14 13 3 16 16 C 1.33389 * 109.59129 * 359.82857 * 15 14 13 17 17 C 1.33389 * 125.20130 * 239.99474 * 13 3 2 18 18 C 1.50703 * 122.53900 * 0.02785 * 17 13 3 19 19 H 1.08991 * 109.46838 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46606 * 299.99459 * 1 2 3 21 21 H 1.08999 * 109.47093 * 59.99725 * 1 2 3 22 22 H 1.09001 * 109.46606 * 240.00541 * 2 1 3 23 23 H 1.08999 * 109.47093 * 120.00274 * 2 1 3 24 24 H 0.97004 * 120.00633 * 180.02562 * 8 7 5 25 25 H 1.07994 * 125.20545 * 179.86655 * 15 14 13 26 26 H 1.08005 * 122.53851 * 180.02562 * 16 15 14 27 27 H 1.09002 * 109.47152 * 269.73210 * 18 17 13 28 28 H 1.09001 * 109.46980 * 149.73311 * 18 17 13 29 29 H 1.09004 * 109.47113 * 29.73291 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8888 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4062 0.3368 -2.1730 9 14 6.0049 0.8812 -1.3820 10 1 6.5975 0.1473 -0.2351 11 1 6.3977 0.2168 -2.6506 12 1 6.4994 2.2815 -1.3822 13 6 1.6415 2.1162 1.2878 14 16 2.1183 1.5904 2.8971 15 6 1.2162 2.9113 3.6285 16 6 0.6382 3.6411 2.6732 17 6 0.8752 3.2040 1.3814 18 6 0.3054 3.9005 0.1726 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3632 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.8292 -0.0616 -2.9497 25 1 1.1422 3.1026 4.6888 26 1 0.0315 4.5077 2.8911 27 1 1.0028 4.6658 -0.1682 28 1 -0.6446 4.3659 0.4356 29 1 0.1457 3.1738 -0.6240 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084335123.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:05 Heat of formation + Delta-G solvation = 8.767896 kcal Electronic energy + Delta-G solvation = -11991.502179 eV Core-core repulsion = 10005.507961 eV Total energy + Delta-G solvation = -1985.994217 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.84024 -34.72487 -31.69760 -30.01753 -28.10766 -25.66869 -23.14433 -22.06824 -19.88652 -17.58349 -16.64322 -15.78303 -14.74774 -14.36198 -13.53454 -13.23287 -12.73008 -12.55420 -12.10066 -11.76002 -11.36425 -11.26084 -11.05553 -10.98047 -10.79687 -10.63045 -10.12712 -9.89546 -9.71641 -9.52241 -9.02433 -8.37121 -7.66864 -7.48434 -6.04650 -4.11930 1.88112 2.49644 2.92655 3.30633 3.34738 3.37677 3.48891 4.40922 5.25322 5.55160 5.81982 6.00220 6.11062 6.24459 6.25833 6.32094 6.44322 6.51890 6.62254 6.77603 6.94803 7.06033 7.20609 7.32071 7.39845 7.68417 7.87001 8.03812 8.33759 8.89742 9.52526 11.00176 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.032607 B = 0.011676 C = 0.010696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.507507 B = 2397.441538 C = 2617.223591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.104 3.896 4 H 0.051 0.949 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C -0.086 4.086 14 S 0.080 5.920 15 C -0.260 4.260 16 C -0.117 4.117 17 C -0.165 4.165 18 C -0.081 4.081 19 H 0.034 0.966 20 H 0.037 0.963 21 H 0.044 0.956 22 H 0.099 0.901 23 H 0.034 0.966 24 H 0.262 0.738 25 H 0.149 0.851 26 H 0.124 0.876 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.739 2.974 5.995 8.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.083 3.917 4 H 0.069 0.931 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C -0.204 4.204 14 S 0.345 5.655 15 C -0.395 4.395 16 C -0.149 4.149 17 C -0.175 4.175 18 C -0.140 4.140 19 H 0.053 0.947 20 H 0.056 0.944 21 H 0.063 0.937 22 H 0.117 0.883 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.167 0.833 26 H 0.142 0.858 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.836 1.695 6.424 7.672 hybrid contribution 0.175 1.202 -0.494 1.312 sum -3.661 2.897 5.930 7.547 Atomic orbital electron populations 1.21836 0.99057 0.99253 1.00214 1.21659 0.91884 0.99172 1.02658 1.17639 0.95880 0.91655 0.86480 0.93092 1.21107 0.90313 1.37937 1.05657 0.92389 1.24927 0.98197 0.95036 0.95538 1.69850 1.35007 1.38312 1.09483 0.86631 0.85576 0.78364 0.77368 1.20150 1.21204 1.20198 1.25212 0.98116 0.98209 0.98832 1.84155 1.51349 1.30001 1.00022 1.25334 1.08574 1.03303 1.02280 1.19902 1.02094 1.00841 0.92053 1.18735 1.04670 0.98939 0.95153 1.20366 0.98865 0.99641 0.95131 0.94725 0.94379 0.93693 0.88294 0.94752 0.92762 0.83332 0.85841 0.92230 0.93103 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.73 37.16 0.36 -2.58 15 2 C -0.12 -2.72 5.21 -26.73 -0.14 -2.86 15 3 C 0.10 2.54 2.00 -92.92 -0.19 2.36 15 4 H 0.05 1.34 6.26 -51.93 -0.32 1.01 15 5 C -0.51 -13.83 8.46 -34.44 -0.29 -14.12 15 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 7 C 0.06 1.75 5.29 -17.82 -0.09 1.66 15 8 N -0.89 -24.62 11.29 55.43 0.63 -24.00 15 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 15 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 13 C -0.09 -1.88 4.01 -36.00 -0.14 -2.03 15 14 S 0.08 1.59 22.89 -107.50 -2.46 -0.87 15 15 C -0.26 -4.46 11.23 29.04 0.33 -4.13 15 16 C -0.12 -2.05 9.98 -41.21 -0.41 -2.46 15 17 C -0.17 -3.26 5.80 -106.25 -0.62 -3.87 15 18 C -0.08 -1.42 9.71 36.01 0.35 -1.07 15 19 H 0.03 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.04 0.74 7.38 -51.93 -0.38 0.36 15 21 H 0.04 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.10 2.58 5.95 -51.93 -0.31 2.27 15 23 H 0.03 0.80 7.84 -51.93 -0.41 0.39 15 24 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 25 H 0.15 2.09 8.06 -52.49 -0.42 1.67 15 26 H 0.12 1.81 8.06 -52.48 -0.42 1.39 15 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 28 H 0.05 0.74 8.13 -51.93 -0.42 0.32 15 29 H 0.07 1.25 6.64 -51.93 -0.34 0.91 15 LS Contribution 255.24 15.07 3.85 3.85 Total: -1.00 -27.43 255.24 -7.70 -35.13 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -3.85 Total: -1.10 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: -0.85 Total: -29.11 kcal Atomic # 7 Polarization: -24.62 SS G_CDS: 0.63 Total: -24.00 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.46 Total: -0.87 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.43 -7.70 -35.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084335123.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.902 kcal (2) G-P(sol) polarization free energy of solvation -27.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds