Wall clock time and date at job start Mon Mar 30 2020 02:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.47364 * 2 1 4 4 C 1.50701 * 109.46939 * 239.99908 * 2 1 3 5 5 H 1.08001 * 120.00119 * 268.76497 * 4 2 1 6 6 C 1.37879 * 120.00130 * 88.76445 * 4 2 1 7 7 N 1.31511 * 120.00097 * 172.80172 * 6 4 2 8 8 Si 1.86803 * 119.99566 * 352.80254 * 6 4 2 9 9 H 1.48505 * 109.47130 * 86.58281 * 8 6 4 10 10 H 1.48503 * 109.46737 * 206.57957 * 8 6 4 11 11 H 1.48494 * 109.47336 * 326.58254 * 8 6 4 12 12 C 1.50707 * 109.47382 * 120.00113 * 2 1 3 13 13 C 1.38265 * 119.98572 * 89.71906 * 12 2 1 14 14 C 1.38223 * 120.04678 * 180.27875 * 13 12 2 15 15 C 1.38215 * 120.02824 * 0.02562 * 14 13 12 16 16 C 1.38437 * 119.97640 * 359.97438 * 15 14 13 17 17 F 1.35094 * 120.02722 * 180.02562 * 16 15 14 18 18 C 1.38178 * 119.98610 * 270.00200 * 12 2 1 19 19 H 1.09006 * 109.46975 * 305.88111 * 1 2 3 20 20 H 1.08992 * 109.47469 * 65.88312 * 1 2 3 21 21 H 1.09003 * 109.47280 * 185.89171 * 1 2 3 22 22 H 0.96700 * 113.99568 * 180.02562 * 3 2 1 23 23 H 0.97001 * 119.99785 * 179.97438 * 7 6 4 24 24 H 1.07998 * 119.97497 * 0.25886 * 13 12 2 25 25 H 1.08006 * 119.98384 * 179.97438 * 14 13 12 26 26 H 1.08000 * 120.01301 * 179.97438 * 15 14 13 27 27 H 1.08000 * 120.00870 * 359.73539 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.2312 -1.7715 -1.1980 6 6 2.2377 -0.0059 -2.3977 7 7 2.8079 -0.5919 -3.4278 8 14 1.7063 1.7810 -2.5159 9 1 2.7921 2.6553 -2.0040 10 1 1.4242 2.1207 -3.9337 11 1 0.4802 1.9875 -1.7040 12 6 2.0324 -0.7105 1.2305 13 6 2.2572 -2.0743 1.1976 14 6 2.7125 -2.7281 2.3271 15 6 2.9430 -2.0192 3.4910 16 6 2.7183 -0.6536 3.5251 17 9 2.9438 0.0404 4.6620 18 6 2.2626 0.0005 2.3928 19 1 -0.3633 0.6024 0.8327 20 1 -0.3634 0.4199 -0.9379 21 1 -0.3634 -1.0223 0.1055 22 1 2.9703 1.4235 -0.0004 23 1 2.9521 -0.0963 -4.2491 24 1 2.0766 -2.6292 0.2888 25 1 2.8874 -3.7936 2.3004 26 1 3.2984 -2.5304 4.3735 27 1 2.0866 1.0657 2.4182 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085877583.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:11 Heat of formation + Delta-G solvation = -92.247375 kcal Electronic energy + Delta-G solvation = -13795.848789 eV Core-core repulsion = 11239.261045 eV Total energy + Delta-G solvation = -2556.587744 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.83525 -40.51495 -38.01784 -34.45022 -33.03465 -31.53499 -30.20163 -27.28213 -24.44120 -23.48457 -21.51471 -19.44825 -18.50705 -17.41770 -16.87067 -16.81929 -16.53340 -16.36931 -15.29103 -14.76920 -14.64627 -14.22477 -14.00251 -13.51533 -13.22491 -13.15293 -12.92423 -12.61745 -12.29679 -12.11164 -11.77985 -11.13518 -10.67506 -10.36981 -9.78823 -9.50121 -8.31287 -6.43093 0.30800 0.36778 1.48391 1.53691 1.74675 2.45848 2.74066 3.04689 3.30972 3.61190 3.87557 4.04317 4.27130 4.44079 4.53386 4.71228 4.84363 4.99169 5.11867 5.16854 5.21371 5.40971 5.46900 5.59283 5.78784 6.01873 6.13291 6.63793 6.91848 7.33294 8.80722 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.044750 B = 0.010821 C = 0.009690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.551935 B = 2586.891080 C = 2888.845431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.251 3.749 3 O -0.564 6.564 4 C -0.550 4.550 5 H 0.063 0.937 6 C 0.025 3.975 7 N -0.935 5.935 8 Si 0.999 3.001 9 H -0.285 1.285 10 H -0.341 1.341 11 H -0.261 1.261 12 C -0.066 4.066 13 C -0.122 4.122 14 C -0.091 4.091 15 C -0.158 4.158 16 C 0.078 3.922 17 F -0.148 7.148 18 C -0.158 4.158 19 H 0.052 0.948 20 H 0.047 0.953 21 H 0.069 0.931 22 H 0.378 0.622 23 H 0.265 0.735 24 H 0.123 0.877 25 H 0.159 0.841 26 H 0.159 0.841 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 -1.168 12.263 12.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.211 3.789 3 O -0.373 6.373 4 C -0.588 4.588 5 H 0.081 0.919 6 C -0.175 4.175 7 N -0.574 5.574 8 Si 0.834 3.166 9 H -0.213 1.213 10 H -0.274 1.274 11 H -0.186 1.186 12 C -0.067 4.067 13 C -0.140 4.140 14 C -0.108 4.108 15 C -0.176 4.176 16 C 0.059 3.941 17 F -0.127 7.127 18 C -0.176 4.176 19 H 0.071 0.929 20 H 0.066 0.934 21 H 0.088 0.912 22 H 0.227 0.773 23 H 0.074 0.926 24 H 0.141 0.859 25 H 0.177 0.823 26 H 0.177 0.823 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.588 -1.025 12.165 12.311 hybrid contribution 0.585 0.730 -0.518 1.069 sum -1.004 -0.295 11.648 11.695 Atomic orbital electron populations 1.21860 0.93791 1.01604 1.00847 1.18132 0.92444 0.78558 0.89728 1.86103 1.27333 1.29521 1.94327 1.21724 1.45184 0.96811 0.95034 0.91930 1.25784 0.93441 1.03217 0.95031 1.70068 1.42965 1.39631 1.04716 0.84863 0.80231 0.79422 0.72087 1.21269 1.27363 1.18647 1.20595 0.96526 0.94861 0.94722 1.21405 0.99157 0.94414 0.99046 1.21313 0.97148 1.01323 0.91065 1.21342 1.03763 0.91752 1.00787 1.17809 1.03101 0.90963 0.82258 1.91446 1.92709 1.79707 1.48824 1.21012 1.03403 1.01423 0.91796 0.92901 0.93422 0.91186 0.77319 0.92603 0.85866 0.82298 0.82346 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 8.46 71.98 0.61 -4.38 15 2 C 0.25 10.88 0.79 -12.29 -0.01 10.87 15 3 O -0.56 -23.88 7.47 -148.98 -1.11 -24.99 15 4 C -0.55 -28.73 8.33 25.60 0.21 -28.52 15 5 H 0.06 3.51 5.94 -2.91 -0.02 3.49 15 6 C 0.02 1.37 5.46 84.66 0.46 1.83 15 7 N -0.94 -56.10 13.96 21.45 0.30 -55.80 15 8 Si 1.00 48.10 24.11 68.60 1.65 49.75 15 9 H -0.29 -13.18 7.11 99.48 0.71 -12.48 15 10 H -0.34 -17.02 7.11 99.48 0.71 -16.31 15 11 H -0.26 -12.16 5.53 99.48 0.55 -11.61 15 12 C -0.07 -2.53 4.80 -19.87 -0.10 -2.63 15 13 C -0.12 -4.34 9.10 22.27 0.20 -4.14 15 14 C -0.09 -2.51 10.04 22.26 0.22 -2.29 15 15 C -0.16 -4.19 10.03 22.31 0.22 -3.96 15 16 C 0.08 2.40 7.30 22.37 0.16 2.56 15 17 F -0.15 -4.47 17.27 44.97 0.78 -3.70 15 18 C -0.16 -5.42 9.33 22.31 0.21 -5.21 15 19 H 0.05 1.91 8.14 -2.38 -0.02 1.89 15 20 H 0.05 2.03 6.07 -2.39 -0.01 2.01 15 21 H 0.07 2.62 8.14 -2.39 -0.02 2.60 15 22 H 0.38 14.77 8.65 -74.06 -0.64 14.13 15 23 H 0.27 15.16 8.31 -92.71 -0.77 14.39 15 24 H 0.12 4.75 6.06 -2.91 -0.02 4.74 15 25 H 0.16 3.29 8.06 -2.91 -0.02 3.27 15 26 H 0.16 3.14 8.06 -2.91 -0.02 3.11 15 27 H 0.13 4.51 7.48 -2.91 -0.02 4.49 15 Total: -1.00 -61.06 231.08 4.21 -56.85 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.40 Total: 13.74 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 2.20 Total: -35.85 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.30 Total: -55.80 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -1.11 Total: -24.99 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.78 Total: -3.70 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 1.65 Total: 49.75 kcal Total: -61.06 4.21 -56.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877583.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.397 kcal (2) G-P(sol) polarization free energy of solvation -61.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds