Wall clock time and date at job start Mon Mar 30 2020 02:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38215 * 120.00788 * 2 1 4 4 C 1.38224 * 120.02235 * 180.02562 * 3 2 1 5 5 C 1.38264 * 120.05371 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99175 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47357 * 160.02099 * 6 5 4 8 8 O 1.42893 * 109.47167 * 40.01752 * 6 5 4 9 9 C 1.50707 * 109.46926 * 280.02280 * 6 5 4 10 10 H 1.08002 * 119.99393 * 359.97438 * 9 6 5 11 11 C 1.37872 * 120.00118 * 179.97438 * 9 6 5 12 12 N 1.31517 * 119.99880 * 359.97438 * 11 9 6 13 13 Si 1.86797 * 120.00121 * 179.97438 * 11 9 6 14 14 H 1.48496 * 109.47008 * 59.99841 * 13 11 9 15 15 H 1.48505 * 109.47148 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47064 * 300.00032 * 13 11 9 17 17 C 1.38183 * 120.02358 * 0.04285 * 5 4 3 18 18 C 1.38437 * 120.01160 * 180.31834 * 2 1 3 19 19 F 1.35099 * 120.02745 * 0.02562 * 18 2 1 20 20 H 1.09000 * 109.47146 * 90.00334 * 1 2 3 21 21 H 1.08999 * 109.46729 * 210.00016 * 1 2 3 22 22 H 1.08999 * 109.47264 * 330.00038 * 1 2 3 23 23 H 1.08000 * 119.99030 * 359.97438 * 3 2 1 24 24 H 1.08004 * 119.97870 * 180.02562 * 4 3 2 25 25 H 0.96700 * 114.00480 * 300.00656 * 8 6 5 26 26 H 0.96997 * 120.00004 * 180.02562 * 12 11 9 27 27 H 1.08002 * 120.01017 * 179.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2733 0.0006 -0.0005 6 6 5.7803 0.0027 -0.0005 7 1 6.1449 -0.9626 0.3506 8 8 6.2552 1.0350 0.8657 9 6 6.2823 0.2506 -1.3997 10 1 5.5801 0.3921 -2.2081 11 6 7.6377 0.2968 -1.6478 12 7 8.4926 0.1250 -0.6633 13 14 8.2599 0.6034 -3.3822 14 1 7.7625 1.9180 -3.8613 15 1 9.7449 0.6068 -3.3820 16 1 7.7669 -0.4702 -4.2820 17 6 3.5843 -1.1972 -0.0009 18 6 2.1995 -1.1987 -0.0067 19 9 1.5248 -2.3692 -0.0137 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6583 2.1322 -0.0004 24 1 4.1200 2.1329 -0.0001 25 1 5.9687 1.9234 0.6131 26 1 9.4462 0.1578 -0.8377 27 1 4.1257 -2.1317 -0.0013 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878704.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:08 Heat of formation + Delta-G solvation = -84.940012 kcal Electronic energy + Delta-G solvation = -13390.769959 eV Core-core repulsion = 10834.499086 eV Total energy + Delta-G solvation = -2556.270873 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.48525 -38.81717 -35.65850 -32.30288 -32.22905 -29.98809 -28.04363 -25.57437 -22.64079 -22.32911 -20.24038 -17.11343 -16.68242 -16.03449 -15.34262 -15.25933 -14.67128 -14.30830 -13.58409 -13.18235 -13.09814 -12.86961 -12.57415 -11.94336 -11.71048 -11.39904 -11.11641 -10.93842 -10.82770 -10.75360 -10.22279 -9.32031 -8.72900 -8.47343 -8.29009 -7.86323 -6.09410 -4.29397 1.70310 1.76639 3.25573 3.30776 3.33162 4.11614 4.36166 4.69769 5.08031 5.14426 5.19181 5.47674 5.65015 5.70477 5.91523 5.93266 5.99753 6.24652 6.43988 6.55141 6.68156 6.84493 6.96674 7.45475 7.64355 7.76021 8.02215 8.72770 9.23177 9.46597 10.94015 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.044106 B = 0.008301 C = 0.008118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.679178 B = 3372.363417 C = 3448.308588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.149 4.149 3 C -0.096 4.096 4 C -0.122 4.122 5 C -0.044 4.044 6 C 0.258 3.742 7 H 0.070 0.930 8 O -0.558 6.558 9 C -0.567 4.567 10 H 0.059 0.941 11 C 0.081 3.919 12 N -0.858 5.858 13 Si 0.894 3.106 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.151 4.151 18 C 0.090 3.910 19 F -0.148 7.148 20 H 0.065 0.935 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.123 0.877 24 H 0.126 0.874 25 H 0.346 0.654 26 H 0.263 0.737 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.205 1.245 0.681 11.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.150 4.150 3 C -0.114 4.114 4 C -0.140 4.140 5 C -0.045 4.045 6 C 0.200 3.800 7 H 0.087 0.913 8 O -0.361 6.361 9 C -0.605 4.605 10 H 0.077 0.923 11 C -0.126 4.126 12 N -0.493 5.493 13 Si 0.721 3.279 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.200 1.200 17 C -0.170 4.170 18 C 0.071 3.929 19 F -0.127 7.127 20 H 0.084 0.916 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.141 0.859 24 H 0.143 0.857 25 H 0.191 0.809 26 H 0.073 0.927 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.756 0.661 1.056 10.828 hybrid contribution 0.034 0.321 -1.367 1.405 sum -10.722 0.983 -0.312 10.771 Atomic orbital electron populations 1.20609 0.91028 1.02486 1.02048 1.19700 0.96256 0.92170 1.06857 1.20797 0.94194 0.96386 1.00027 1.20983 0.93388 0.98590 1.01047 1.21322 1.00329 0.91499 0.91315 1.18541 0.81300 0.89643 0.90473 0.91264 1.86627 1.77508 1.16919 1.55065 1.21478 0.91991 1.53461 0.93530 0.92326 1.25045 0.96816 0.93776 0.96982 1.70061 1.02200 1.46005 1.31044 0.86641 0.77669 0.79038 0.84527 1.20008 1.21092 1.20030 1.21019 0.91499 0.99973 1.04496 1.17548 0.90089 0.80513 1.04790 1.91414 1.80539 1.46520 1.94228 0.91582 0.91836 0.91577 0.85922 0.85658 0.80891 0.92677 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 9.83 36.01 0.35 -0.95 15 2 C -0.15 -2.40 5.89 -104.55 -0.62 -3.02 15 3 C -0.10 -1.52 9.70 -39.60 -0.38 -1.90 15 4 C -0.12 -2.24 9.31 -39.58 -0.37 -2.61 15 5 C -0.04 -0.93 4.91 -104.63 -0.51 -1.45 15 6 C 0.26 6.45 3.07 -29.03 -0.09 6.36 15 7 H 0.07 1.88 8.00 -51.93 -0.42 1.46 15 8 O -0.56 -14.02 12.58 -35.23 -0.44 -14.46 15 9 C -0.57 -15.23 8.74 -34.44 -0.30 -15.53 15 10 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 11 C 0.08 2.20 5.40 -17.82 -0.10 2.11 15 12 N -0.86 -24.75 12.84 55.43 0.71 -24.04 15 13 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 15 14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 16 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 17 C -0.15 -3.00 9.65 -39.51 -0.38 -3.38 15 18 C 0.09 1.62 7.24 -39.42 -0.29 1.34 15 19 F -0.15 -2.59 16.48 2.25 0.04 -2.55 15 20 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.06 0.77 7.65 -51.93 -0.40 0.37 15 22 H 0.07 0.69 8.09 -51.93 -0.42 0.27 15 23 H 0.12 1.55 8.06 -52.49 -0.42 1.12 15 24 H 0.13 2.13 6.78 -52.48 -0.36 1.78 15 25 H 0.35 7.54 7.50 45.56 0.34 7.88 15 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 27 H 0.13 2.51 8.04 -52.49 -0.42 2.08 15 LS Contribution 244.80 15.07 3.69 3.69 Total: -1.00 -29.53 244.80 -5.76 -35.29 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -2.06 Total: 5.32 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -2.68 Total: -19.04 kcal Atomic # 7 Polarization: -24.75 SS G_CDS: 0.71 Total: -24.04 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.44 Total: -14.46 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.53 -5.76 -35.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878704.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.652 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds