Wall clock time and date at job start Mon Mar 30 2020 02:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38215 * 120.00788 * 2 1 4 4 C 1.38224 * 120.02235 * 180.02562 * 3 2 1 5 5 C 1.38264 * 120.05371 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99175 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47357 * 160.02099 * 6 5 4 8 8 O 1.42893 * 109.47167 * 40.01752 * 6 5 4 9 9 C 1.50707 * 109.46926 * 280.02280 * 6 5 4 10 10 H 1.08002 * 119.99393 * 359.97438 * 9 6 5 11 11 C 1.37872 * 120.00118 * 179.97438 * 9 6 5 12 12 N 1.31517 * 119.99880 * 359.97438 * 11 9 6 13 13 Si 1.86797 * 120.00121 * 179.97438 * 11 9 6 14 14 H 1.48496 * 109.47008 * 59.99841 * 13 11 9 15 15 H 1.48505 * 109.47148 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47064 * 300.00032 * 13 11 9 17 17 C 1.38183 * 120.02358 * 0.04285 * 5 4 3 18 18 C 1.38437 * 120.01160 * 180.31834 * 2 1 3 19 19 F 1.35099 * 120.02745 * 0.02562 * 18 2 1 20 20 H 1.09000 * 109.47146 * 90.00334 * 1 2 3 21 21 H 1.08999 * 109.46729 * 210.00016 * 1 2 3 22 22 H 1.08999 * 109.47264 * 330.00038 * 1 2 3 23 23 H 1.08000 * 119.99030 * 359.97438 * 3 2 1 24 24 H 1.08004 * 119.97870 * 180.02562 * 4 3 2 25 25 H 0.96700 * 114.00480 * 300.00656 * 8 6 5 26 26 H 0.96997 * 120.00004 * 180.02562 * 12 11 9 27 27 H 1.08002 * 120.01017 * 179.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2733 0.0006 -0.0005 6 6 5.7803 0.0027 -0.0005 7 1 6.1449 -0.9626 0.3506 8 8 6.2552 1.0350 0.8657 9 6 6.2823 0.2506 -1.3997 10 1 5.5801 0.3921 -2.2081 11 6 7.6377 0.2968 -1.6478 12 7 8.4926 0.1250 -0.6633 13 14 8.2599 0.6034 -3.3822 14 1 7.7625 1.9180 -3.8613 15 1 9.7449 0.6068 -3.3820 16 1 7.7669 -0.4702 -4.2820 17 6 3.5843 -1.1972 -0.0009 18 6 2.1995 -1.1987 -0.0067 19 9 1.5248 -2.3692 -0.0137 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6583 2.1322 -0.0004 24 1 4.1200 2.1329 -0.0001 25 1 5.9687 1.9234 0.6131 26 1 9.4462 0.1578 -0.8377 27 1 4.1257 -2.1317 -0.0013 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878704.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:08 Heat of formation + Delta-G solvation = -104.016883 kcal Electronic energy + Delta-G solvation = -13391.597194 eV Core-core repulsion = 10834.499086 eV Total energy + Delta-G solvation = -2557.098108 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.87977 -40.29635 -37.47786 -34.32793 -33.71354 -31.38479 -29.71984 -27.23318 -24.37677 -23.73228 -21.76173 -19.14214 -18.24713 -17.47226 -16.85231 -16.67639 -16.63180 -15.95575 -15.14330 -14.85957 -14.39844 -14.23388 -13.95322 -13.54496 -13.24690 -13.11796 -12.78666 -12.56992 -12.40290 -12.21857 -12.06105 -11.23004 -10.77103 -10.37743 -9.75960 -9.34638 -8.16675 -6.44660 0.27761 0.35298 1.41053 1.42417 1.50988 2.36599 2.72130 3.07933 3.31335 3.83246 3.87577 4.11095 4.32684 4.32944 4.50364 4.72806 4.81075 4.90165 5.07282 5.16661 5.26186 5.37287 5.46605 5.61025 5.88144 5.97871 6.07148 6.65079 7.27293 7.45416 8.86512 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.044106 B = 0.008301 C = 0.008118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.679178 B = 3372.363417 C = 3448.308588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.137 4.137 3 C -0.084 4.084 4 C -0.126 4.126 5 C -0.072 4.072 6 C 0.261 3.739 7 H 0.030 0.970 8 O -0.573 6.573 9 C -0.577 4.577 10 H 0.057 0.943 11 C 0.029 3.971 12 N -0.898 5.898 13 Si 0.963 3.037 14 H -0.264 1.264 15 H -0.282 1.282 16 H -0.271 1.271 17 C -0.169 4.169 18 C 0.078 3.922 19 F -0.146 7.146 20 H 0.081 0.919 21 H 0.064 0.936 22 H 0.094 0.906 23 H 0.167 0.833 24 H 0.136 0.864 25 H 0.360 0.640 26 H 0.264 0.736 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.372 2.651 -0.234 13.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.138 4.138 3 C -0.102 4.102 4 C -0.144 4.144 5 C -0.073 4.073 6 C 0.203 3.797 7 H 0.048 0.952 8 O -0.378 6.378 9 C -0.614 4.614 10 H 0.076 0.924 11 C -0.174 4.174 12 N -0.535 5.535 13 Si 0.787 3.213 14 H -0.188 1.188 15 H -0.208 1.208 16 H -0.196 1.196 17 C -0.188 4.188 18 C 0.059 3.941 19 F -0.125 7.125 20 H 0.099 0.901 21 H 0.083 0.917 22 H 0.113 0.887 23 H 0.185 0.815 24 H 0.154 0.846 25 H 0.206 0.794 26 H 0.073 0.927 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.943 2.071 0.137 13.108 hybrid contribution 0.608 -0.128 -1.029 1.202 sum -12.334 1.943 -0.892 12.518 Atomic orbital electron populations 1.20734 0.87837 1.04070 1.03469 1.20223 0.98520 0.91167 1.03906 1.21221 0.93021 0.98105 0.97817 1.21173 0.94869 0.97721 1.00620 1.20918 0.98081 0.93324 0.94958 1.18216 0.84159 0.87927 0.89374 0.95183 1.86550 1.78193 1.17859 1.55238 1.21777 0.92290 1.52939 0.94409 0.92449 1.25899 0.97039 0.93445 1.01006 1.70194 1.02436 1.47467 1.33358 0.85565 0.77046 0.79264 0.79457 1.18830 1.20775 1.19642 1.20997 0.92789 0.99333 1.05683 1.17640 0.89439 0.81568 1.05411 1.91414 1.80218 1.46611 1.94262 0.90059 0.91659 0.88713 0.81517 0.84632 0.79381 0.92675 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.12 9.83 71.24 0.70 -1.42 15 2 C -0.14 -3.97 5.89 -19.82 -0.12 -4.09 15 3 C -0.08 -2.35 9.70 22.26 0.22 -2.13 15 4 C -0.13 -4.42 9.31 22.27 0.21 -4.22 15 5 C -0.07 -3.10 4.91 -19.87 -0.10 -3.20 15 6 C 0.26 13.55 3.07 29.10 0.09 13.64 15 7 H 0.03 1.76 8.00 -2.39 -0.02 1.74 15 8 O -0.57 -29.62 12.58 -148.98 -1.87 -31.49 15 9 C -0.58 -31.58 8.74 25.60 0.22 -31.36 15 10 H 0.06 3.08 7.74 -2.91 -0.02 3.06 15 11 C 0.03 1.61 5.40 84.65 0.46 2.06 15 12 N -0.90 -53.12 12.84 21.45 0.28 -52.85 15 13 Si 0.96 42.88 29.54 68.60 2.03 44.91 15 14 H -0.26 -11.20 7.11 99.48 0.71 -10.49 15 15 H -0.28 -12.34 7.11 99.48 0.71 -11.64 15 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 17 C -0.17 -6.87 9.65 22.31 0.22 -6.65 15 18 C 0.08 2.75 7.24 22.38 0.16 2.92 15 19 F -0.15 -4.95 16.48 44.97 0.74 -4.21 15 20 H 0.08 1.47 8.14 -2.39 -0.02 1.46 15 21 H 0.06 1.33 7.65 -2.39 -0.02 1.32 15 22 H 0.09 1.43 8.09 -2.39 -0.02 1.41 15 23 H 0.17 3.22 8.06 -2.91 -0.02 3.20 15 24 H 0.14 4.38 6.78 -2.91 -0.02 4.36 15 25 H 0.36 15.87 7.50 -74.06 -0.56 15.32 15 26 H 0.26 14.77 8.31 -92.71 -0.77 14.00 15 27 H 0.12 4.91 8.04 -2.91 -0.02 4.88 15 Total: -1.00 -64.47 244.80 3.86 -60.62 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.63 Total: 17.48 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 2.06 Total: -34.46 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.28 Total: -52.85 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -1.87 Total: -31.49 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.74 Total: -4.21 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -64.47 3.86 -60.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878704.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.399 kcal (2) G-P(sol) polarization free energy of solvation -64.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds