Wall clock time and date at job start Mon Mar 30 2020 02:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38217 * 119.98712 * 2 1 4 4 C 1.38434 * 119.97400 * 180.02562 * 3 2 1 5 5 F 1.35099 * 120.02897 * 180.02562 * 4 3 2 6 6 C 1.38485 * 119.94974 * 359.97438 * 4 3 2 7 7 C 1.38176 * 119.97529 * 0.02562 * 6 4 3 8 8 C 1.38226 * 119.98766 * 180.02562 * 2 1 3 9 9 C 1.50706 * 119.97375 * 0.02562 * 8 2 1 10 10 H 1.09006 * 109.46902 * 324.99996 * 9 8 2 11 11 O 1.42896 * 109.47019 * 204.99677 * 9 8 2 12 12 C 1.50702 * 109.46874 * 84.99849 * 9 8 2 13 13 H 1.08001 * 120.00189 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99952 * 180.02562 * 12 9 8 15 15 N 1.31512 * 120.00338 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 119.99935 * 0.02562 * 14 12 9 17 17 H 1.48497 * 109.47422 * 90.00002 * 16 14 12 18 18 H 1.48496 * 109.47074 * 210.00125 * 16 14 12 19 19 H 1.48507 * 109.46739 * 329.99738 * 16 14 12 20 20 H 1.09003 * 109.47242 * 90.00443 * 1 2 3 21 21 H 1.09006 * 109.46916 * 210.00441 * 1 2 3 22 22 H 1.08994 * 109.47175 * 330.00118 * 1 2 3 23 23 H 1.08003 * 120.01075 * 0.02562 * 3 2 1 24 24 H 1.07996 * 120.01197 * 179.73163 * 6 4 3 25 25 H 1.07991 * 119.98927 * 179.97438 * 7 6 4 26 26 H 0.96694 * 114.00161 * 299.99977 * 11 9 8 27 27 H 0.96997 * 119.99994 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5822 1.1968 -0.0005 5 9 4.2586 2.3663 0.0000 6 6 4.2733 -0.0033 -0.0005 7 6 3.5806 -1.1988 -0.0005 8 6 2.1979 -1.1972 -0.0005 9 6 1.4435 -2.5019 -0.0017 10 1 0.5326 -2.3954 0.5875 11 8 2.2619 -3.5258 0.5672 12 6 1.0854 -2.8737 -1.4175 13 1 1.3747 -2.2296 -2.2347 14 6 0.3874 -4.0358 -1.6696 15 7 0.0744 -4.3601 -2.9050 16 14 -0.1149 -5.1489 -0.2560 17 1 -1.4551 -4.7451 0.2399 18 1 -0.1649 -6.5560 -0.7276 19 1 0.8762 -5.0303 0.8436 20 1 -0.3634 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5138 23 1 1.6578 2.1325 0.0004 24 1 5.3532 -0.0047 -0.0053 25 1 4.1193 -2.1348 -0.0010 26 1 3.0912 -3.6754 0.0930 27 1 -0.4162 -5.1778 -3.0823 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878803.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:36 Heat of formation + Delta-G solvation = -76.186965 kcal Electronic energy + Delta-G solvation = -13600.648255 eV Core-core repulsion = 11044.756943 eV Total energy + Delta-G solvation = -2555.891313 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.53216 -39.10743 -35.80942 -32.62632 -32.17837 -30.38104 -27.25587 -26.41643 -23.11303 -21.52259 -20.23793 -17.56155 -16.81508 -16.12875 -15.66972 -15.24147 -14.85737 -14.08978 -13.81147 -13.13801 -12.95828 -12.80673 -12.53996 -12.33785 -11.78369 -11.61384 -11.30719 -10.97946 -10.60554 -10.52043 -10.08346 -9.22202 -8.76687 -8.55573 -8.46488 -7.81739 -6.20363 -4.33036 1.66687 1.68220 3.32239 3.42970 3.67422 4.07032 4.45202 4.64214 5.08281 5.14853 5.22036 5.48950 5.63183 5.69752 5.77296 5.98223 6.20399 6.22722 6.49529 6.50142 6.66448 6.72169 6.85706 7.33881 7.38665 7.43955 8.20636 8.71965 8.89893 9.41877 10.89633 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.048809 B = 0.009444 C = 0.008987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.525154 B = 2964.256561 C = 3114.960891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.054 4.054 3 C -0.157 4.157 4 C 0.073 3.927 5 F -0.151 7.151 6 C -0.160 4.160 7 C -0.088 4.088 8 C -0.074 4.074 9 C 0.224 3.776 10 H 0.072 0.928 11 O -0.577 6.577 12 C -0.555 4.555 13 H 0.074 0.926 14 C 0.086 3.914 15 N -0.888 5.888 16 Si 0.866 3.134 17 H -0.285 1.285 18 H -0.294 1.294 19 H -0.217 1.217 20 H 0.080 0.920 21 H 0.075 0.925 22 H 0.056 0.944 23 H 0.127 0.873 24 H 0.126 0.874 25 H 0.130 0.870 26 H 0.357 0.643 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.979 7.080 6.364 10.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.054 4.054 3 C -0.176 4.176 4 C 0.054 3.946 5 F -0.130 7.130 6 C -0.179 4.179 7 C -0.106 4.106 8 C -0.075 4.075 9 C 0.167 3.833 10 H 0.090 0.910 11 O -0.384 6.384 12 C -0.592 4.592 13 H 0.093 0.907 14 C -0.119 4.119 15 N -0.524 5.524 16 Si 0.692 3.308 17 H -0.212 1.212 18 H -0.220 1.220 19 H -0.140 1.140 20 H 0.098 0.902 21 H 0.094 0.906 22 H 0.075 0.925 23 H 0.145 0.855 24 H 0.144 0.856 25 H 0.147 0.853 26 H 0.204 0.796 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.432 6.974 6.678 10.248 hybrid contribution 0.262 -0.264 -0.087 0.381 sum 3.694 6.710 6.591 10.105 Atomic orbital electron populations 1.20802 0.90610 1.02119 1.03274 1.19561 0.96556 0.91440 0.97842 1.20891 0.92083 0.98936 1.05658 1.17578 0.90146 0.80956 1.05944 1.91430 1.80470 1.46672 1.94456 1.20981 1.00112 0.91424 1.05384 1.20750 0.93916 0.97183 0.98732 1.20920 0.94027 0.97154 0.95359 1.18952 0.88931 0.80379 0.95065 0.91042 1.86732 1.34791 1.58467 1.58425 1.21309 1.38290 1.08586 0.91062 0.90746 1.24981 0.93756 0.97302 0.95816 1.69937 1.38162 1.24734 1.19580 0.87097 0.79588 0.79137 0.84982 1.21158 1.22008 1.13960 0.90154 0.90625 0.92503 0.85541 0.85592 0.85265 0.79585 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 9.60 36.01 0.35 -1.50 15 2 C -0.05 -0.98 5.88 -104.63 -0.62 -1.60 15 3 C -0.16 -2.62 9.68 -39.52 -0.38 -3.00 15 4 C 0.07 1.22 7.30 -39.42 -0.29 0.94 15 5 F -0.15 -2.47 17.27 2.25 0.04 -2.43 15 6 C -0.16 -2.61 10.03 -39.51 -0.40 -3.01 15 7 C -0.09 -1.56 9.30 -39.59 -0.37 -1.93 15 8 C -0.07 -1.47 5.00 -104.61 -0.52 -2.00 15 9 C 0.22 5.01 2.05 -29.03 -0.06 4.95 15 10 H 0.07 1.61 5.59 -51.93 -0.29 1.32 15 11 O -0.58 -12.50 9.80 -35.23 -0.35 -12.84 15 12 C -0.56 -14.70 9.33 -34.44 -0.32 -15.02 15 13 H 0.07 2.18 7.98 -52.49 -0.42 1.76 15 14 C 0.09 2.39 5.47 -17.82 -0.10 2.29 15 15 N -0.89 -26.17 13.96 55.43 0.77 -25.39 15 16 Si 0.87 20.78 26.99 -169.99 -4.59 16.19 15 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 19 H -0.22 -5.08 5.31 56.52 0.30 -4.78 15 20 H 0.08 1.38 8.14 -51.93 -0.42 0.96 15 21 H 0.08 1.30 6.03 -51.93 -0.31 0.99 15 22 H 0.06 0.76 8.08 -51.93 -0.42 0.34 15 23 H 0.13 1.80 8.06 -52.48 -0.42 1.38 15 24 H 0.13 1.73 8.06 -52.49 -0.42 1.30 15 25 H 0.13 2.05 6.40 -52.49 -0.34 1.71 15 26 H 0.36 6.74 7.31 45.56 0.33 7.07 15 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 LS Contribution 235.14 15.07 3.54 3.54 Total: -1.00 -29.59 235.14 -5.23 -34.82 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -1.95 Total: 5.99 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -2.71 Total: -19.88 kcal Atomic # 7 Polarization: -26.17 SS G_CDS: 0.77 Total: -25.39 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.35 Total: -12.84 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.59 Total: 16.19 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -29.59 -5.23 -34.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878803.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.364 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds