Wall clock time and date at job start Mon Mar 30 2020 02:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38217 * 119.98712 * 2 1 4 4 C 1.38434 * 119.97400 * 180.02562 * 3 2 1 5 5 F 1.35099 * 120.02897 * 180.02562 * 4 3 2 6 6 C 1.38485 * 119.94974 * 359.97438 * 4 3 2 7 7 C 1.38176 * 119.97529 * 0.02562 * 6 4 3 8 8 C 1.38226 * 119.98766 * 180.02562 * 2 1 3 9 9 C 1.50706 * 119.97375 * 0.02562 * 8 2 1 10 10 H 1.09006 * 109.46902 * 324.99996 * 9 8 2 11 11 O 1.42896 * 109.47019 * 204.99677 * 9 8 2 12 12 C 1.50702 * 109.46874 * 84.99849 * 9 8 2 13 13 H 1.08001 * 120.00189 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99952 * 180.02562 * 12 9 8 15 15 N 1.31512 * 120.00338 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 119.99935 * 0.02562 * 14 12 9 17 17 H 1.48497 * 109.47422 * 90.00002 * 16 14 12 18 18 H 1.48496 * 109.47074 * 210.00125 * 16 14 12 19 19 H 1.48507 * 109.46739 * 329.99738 * 16 14 12 20 20 H 1.09003 * 109.47242 * 90.00443 * 1 2 3 21 21 H 1.09006 * 109.46916 * 210.00441 * 1 2 3 22 22 H 1.08994 * 109.47175 * 330.00118 * 1 2 3 23 23 H 1.08003 * 120.01075 * 0.02562 * 3 2 1 24 24 H 1.07996 * 120.01197 * 179.73163 * 6 4 3 25 25 H 1.07991 * 119.98927 * 179.97438 * 7 6 4 26 26 H 0.96694 * 114.00161 * 299.99977 * 11 9 8 27 27 H 0.96997 * 119.99994 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5822 1.1968 -0.0005 5 9 4.2586 2.3663 0.0000 6 6 4.2733 -0.0033 -0.0005 7 6 3.5806 -1.1988 -0.0005 8 6 2.1979 -1.1972 -0.0005 9 6 1.4435 -2.5019 -0.0017 10 1 0.5326 -2.3954 0.5875 11 8 2.2619 -3.5258 0.5672 12 6 1.0854 -2.8737 -1.4175 13 1 1.3747 -2.2296 -2.2347 14 6 0.3874 -4.0358 -1.6696 15 7 0.0744 -4.3601 -2.9050 16 14 -0.1149 -5.1489 -0.2560 17 1 -1.4551 -4.7451 0.2399 18 1 -0.1649 -6.5560 -0.7276 19 1 0.8762 -5.0303 0.8436 20 1 -0.3634 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5138 23 1 1.6578 2.1325 0.0004 24 1 5.3532 -0.0047 -0.0053 25 1 4.1193 -2.1348 -0.0010 26 1 3.0912 -3.6754 0.0930 27 1 -0.4162 -5.1778 -3.0823 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878803.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:36 Heat of formation + Delta-G solvation = -95.467942 kcal Electronic energy + Delta-G solvation = -13601.484341 eV Core-core repulsion = 11044.756943 eV Total energy + Delta-G solvation = -2556.727398 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.83402 -40.53716 -37.49299 -34.49272 -33.74768 -31.86579 -29.00314 -27.85010 -24.82655 -22.92473 -21.75300 -19.49596 -18.19102 -17.53171 -17.29398 -16.79748 -16.54132 -15.56229 -15.36334 -14.84720 -14.45653 -14.22508 -14.02572 -13.91373 -13.50271 -13.09456 -12.83183 -12.74656 -12.36519 -11.91012 -11.76807 -11.17445 -10.82035 -10.35433 -9.79105 -9.28733 -8.33281 -6.48726 0.28151 0.34453 1.41780 1.48273 1.76431 2.44404 2.68655 3.03439 3.31805 3.83314 3.94345 3.97696 4.11817 4.31169 4.40341 4.72158 4.86670 4.89635 5.04402 5.14014 5.23617 5.32457 5.39974 5.48164 5.83950 6.02343 6.12671 6.63600 7.12563 7.31950 8.80492 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.048809 B = 0.009444 C = 0.008987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.525154 B = 2964.256561 C = 3114.960891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.066 4.066 3 C -0.156 4.156 4 C 0.071 3.929 5 F -0.147 7.147 6 C -0.157 4.157 7 C -0.094 4.094 8 C -0.105 4.105 9 C 0.234 3.766 10 H 0.071 0.929 11 O -0.579 6.579 12 C -0.547 4.547 13 H 0.033 0.967 14 C 0.033 3.967 15 N -0.937 5.937 16 Si 0.932 3.068 17 H -0.281 1.281 18 H -0.298 1.298 19 H -0.204 1.204 20 H 0.066 0.934 21 H 0.065 0.935 22 H 0.090 0.910 23 H 0.152 0.848 24 H 0.155 0.845 25 H 0.144 0.856 26 H 0.369 0.631 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.687 7.828 7.970 12.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.066 4.066 3 C -0.174 4.174 4 C 0.052 3.948 5 F -0.125 7.125 6 C -0.175 4.175 7 C -0.111 4.111 8 C -0.106 4.106 9 C 0.176 3.824 10 H 0.089 0.911 11 O -0.387 6.387 12 C -0.585 4.585 13 H 0.051 0.949 14 C -0.167 4.167 15 N -0.576 5.576 16 Si 0.756 3.244 17 H -0.207 1.207 18 H -0.225 1.225 19 H -0.126 1.126 20 H 0.085 0.915 21 H 0.083 0.917 22 H 0.109 0.891 23 H 0.170 0.830 24 H 0.172 0.828 25 H 0.162 0.838 26 H 0.218 0.782 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.157 7.737 8.294 12.080 hybrid contribution 0.126 -0.380 -0.632 0.748 sum 4.284 7.357 7.662 11.453 Atomic orbital electron populations 1.20809 0.89880 1.03327 1.02700 1.19772 0.97372 0.91582 0.97912 1.21118 0.92309 0.99352 1.04649 1.17752 0.90410 0.81319 1.05345 1.91447 1.80348 1.46395 1.94345 1.21249 1.01583 0.90619 1.04075 1.20954 0.93264 0.98563 0.98361 1.20833 0.95069 0.96496 0.98199 1.18655 0.89615 0.81872 0.92237 0.91140 1.86653 1.35470 1.58336 1.58275 1.21492 1.37161 1.07426 0.92387 0.94891 1.25805 0.93987 0.98972 0.97910 1.70068 1.40059 1.25663 1.21804 0.86089 0.79517 0.76720 0.82122 1.20708 1.22475 1.12619 0.91536 0.91661 0.89104 0.83029 0.82766 0.83824 0.78171 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.55 9.60 71.24 0.68 -2.87 15 2 C -0.07 -2.33 5.88 -19.87 -0.12 -2.44 15 3 C -0.16 -4.82 9.68 22.31 0.22 -4.60 15 4 C 0.07 2.19 7.30 22.38 0.16 2.35 15 5 F -0.15 -4.34 17.27 44.97 0.78 -3.56 15 6 C -0.16 -4.69 10.03 22.31 0.22 -4.46 15 7 C -0.09 -3.15 9.30 22.26 0.21 -2.94 15 8 C -0.11 -4.09 5.00 -19.86 -0.10 -4.18 15 9 C 0.23 10.29 2.05 29.10 0.06 10.35 15 10 H 0.07 3.12 5.59 -2.38 -0.01 3.11 15 11 O -0.58 -24.03 9.80 -148.98 -1.46 -25.49 15 12 C -0.55 -29.39 9.33 25.60 0.24 -29.15 15 13 H 0.03 2.00 7.98 -2.91 -0.02 1.98 15 14 C 0.03 1.85 5.47 84.66 0.46 2.32 15 15 N -0.94 -56.57 13.96 21.45 0.30 -56.27 15 16 Si 0.93 43.00 26.99 68.60 1.85 44.85 15 17 H -0.28 -12.68 7.11 99.48 0.71 -11.98 15 18 H -0.30 -13.86 7.11 99.48 0.71 -13.16 15 19 H -0.20 -8.94 5.31 99.48 0.53 -8.41 15 20 H 0.07 2.29 8.14 -2.39 -0.02 2.27 15 21 H 0.06 2.20 6.03 -2.38 -0.01 2.18 15 22 H 0.09 2.22 8.08 -2.39 -0.02 2.20 15 23 H 0.15 3.83 8.06 -2.91 -0.02 3.81 15 24 H 0.15 3.67 8.06 -2.91 -0.02 3.65 15 25 H 0.14 4.26 6.40 -2.92 -0.02 4.24 15 26 H 0.37 13.30 7.31 -74.06 -0.54 12.76 15 27 H 0.27 15.19 8.31 -92.71 -0.77 14.42 15 Total: -1.00 -63.00 235.14 3.98 -59.02 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.47 Total: 17.08 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 2.04 Total: -35.63 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.30 Total: -56.27 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -1.46 Total: -25.49 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.78 Total: -3.56 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.85 Total: 44.85 kcal Total: -63.00 3.98 -59.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878803.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.450 kcal (2) G-P(sol) polarization free energy of solvation -63.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds