Wall clock time and date at job start Mon Mar 30 2020 02:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30928 * 125.76605 * 2 1 4 4 N 1.28868 * 109.00666 * 179.97438 * 3 2 1 5 5 H 0.96996 * 125.95281 * 179.97438 * 4 3 2 6 6 C 1.35191 * 108.09315 * 0.02562 * 4 3 2 7 7 C 1.47766 * 126.44523 * 180.02562 * 6 4 3 8 8 O 1.21557 * 120.00047 * 359.96984 * 7 6 4 9 9 N 1.34776 * 120.00091 * 179.97438 * 7 6 4 10 10 C 1.46504 * 120.00408 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47554 * 179.97438 * 10 9 7 12 12 H 1.08001 * 119.99840 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99705 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99655 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 120.00602 * 0.02562 * 13 11 10 16 16 H 1.48507 * 109.47143 * 89.99657 * 15 13 11 17 17 H 1.48494 * 109.47356 * 209.99687 * 15 13 11 18 18 H 1.48506 * 109.46703 * 330.00055 * 15 13 11 19 19 N 1.32154 * 107.10857 * 359.97438 * 6 4 3 20 20 H 1.09000 * 109.47481 * 270.00260 * 1 2 3 21 21 H 1.09001 * 109.46845 * 30.00511 * 1 2 3 22 22 H 1.09001 * 109.47056 * 149.99747 * 1 2 3 23 23 H 0.97003 * 120.00252 * 359.97438 * 9 7 6 24 24 H 1.09001 * 109.46918 * 300.00066 * 10 9 7 25 25 H 1.09003 * 109.46922 * 59.98920 * 10 9 7 26 26 H 0.97003 * 120.00015 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2722 1.0624 0.0000 4 7 3.5061 0.6908 0.0005 5 1 4.2778 1.2784 0.0003 6 6 3.5376 -0.6608 0.0003 7 6 4.7464 -1.5107 0.0013 8 8 5.8491 -0.9991 0.0019 9 7 4.6263 -2.8531 0.0015 10 6 5.8247 -3.6958 0.0019 11 6 5.4185 -5.1470 0.0027 12 1 4.3722 -5.4148 0.0024 13 6 6.3825 -6.1327 0.0026 14 7 6.0280 -7.3991 0.0028 15 14 8.1921 -5.6695 0.0023 16 1 8.6719 -5.5465 1.4024 17 1 8.9723 -6.7214 -0.6976 18 1 8.3708 -4.3721 -0.6979 19 7 2.2839 -1.0788 0.0002 20 1 -0.3634 0.0000 1.0276 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3633 -0.8900 -0.5139 23 1 3.7464 -3.2614 0.0013 24 1 6.4177 -3.4846 -0.8880 25 1 6.4174 -3.4842 0.8919 26 1 6.7062 -8.0927 0.0031 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087446915.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:38 Heat of formation + Delta-G solvation = 41.642311 kcal Electronic energy + Delta-G solvation = -13108.446047 eV Core-core repulsion = 10609.876908 eV Total energy + Delta-G solvation = -2498.569139 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.44186 -38.98532 -34.71045 -33.79561 -32.62387 -32.00900 -28.60011 -28.06807 -24.46932 -22.06891 -21.10924 -20.39194 -18.78324 -17.37336 -16.47484 -16.25142 -15.33712 -14.57041 -14.41588 -13.73195 -13.23146 -13.12161 -12.67028 -12.45599 -12.35368 -12.19045 -11.12962 -10.84535 -10.56099 -10.45215 -10.08685 -9.90830 -9.55367 -9.47175 -8.85176 -8.37450 -6.24988 -4.28572 1.20003 2.44124 2.49216 3.23120 3.30320 3.36325 3.43741 3.56656 4.22046 4.28976 4.45490 5.05575 5.09347 5.46394 5.51460 5.67840 6.20590 6.27169 6.62510 6.70482 6.92360 6.92861 7.25244 7.87627 8.11226 8.36200 8.49908 8.75863 9.32656 10.86772 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.057554 B = 0.006867 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.380048 B = 4076.458629 C = 4542.392520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.184 3.816 3 N -0.306 5.306 4 N -0.367 5.367 5 H 0.455 0.545 6 C 0.188 3.812 7 C 0.586 3.414 8 O -0.549 6.549 9 N -0.666 5.666 10 C 0.219 3.781 11 C -0.547 4.547 12 H 0.084 0.916 13 C 0.080 3.920 14 N -0.888 5.888 15 Si 0.876 3.124 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.261 1.261 19 N -0.469 5.469 20 H 0.082 0.918 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.411 0.589 24 H 0.033 0.967 25 H 0.028 0.972 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.094 13.430 -0.042 15.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 N -0.145 5.145 4 N -0.089 5.089 5 H 0.303 0.697 6 C -0.091 4.091 7 C 0.366 3.634 8 O -0.427 6.427 9 N -0.314 5.314 10 C 0.097 3.903 11 C -0.585 4.585 12 H 0.102 0.898 13 C -0.125 4.125 14 N -0.525 5.525 15 Si 0.702 3.298 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.185 1.185 19 N -0.198 5.198 20 H 0.100 0.900 21 H 0.099 0.901 22 H 0.106 0.894 23 H 0.247 0.753 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.659 13.752 -0.046 15.280 hybrid contribution 1.215 0.205 0.034 1.233 sum -5.444 13.958 -0.012 14.982 Atomic orbital electron populations 1.20026 0.83464 1.04053 1.03690 1.24320 0.98762 0.83971 1.02536 1.74111 0.89826 1.27254 1.23337 1.44806 1.07188 1.06912 1.50040 0.69733 1.24626 0.95161 0.84433 1.04859 1.16565 0.84593 0.83024 0.79218 1.90811 1.25310 1.73922 1.52647 1.46046 1.13116 1.03671 1.68523 1.19707 0.83055 0.90093 0.97405 1.21046 0.96113 0.87532 1.53786 0.89843 1.24773 0.99245 0.94650 0.93802 1.69876 1.34339 0.99364 1.48951 0.86832 0.84795 0.79045 0.79091 1.19768 1.20792 1.18491 1.71213 0.98829 1.30368 1.19403 0.89979 0.90085 0.89410 0.75267 0.94951 0.95406 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.49 10.51 36.00 0.38 -0.12 15 2 C 0.18 2.56 8.14 -156.93 -1.28 1.28 15 3 N -0.31 -4.27 12.28 32.40 0.40 -3.88 15 4 N -0.37 -5.09 6.98 32.25 0.23 -4.87 15 5 H 0.46 5.03 8.96 -190.20 -1.70 3.32 15 6 C 0.19 3.11 8.03 -155.26 -1.25 1.87 15 7 C 0.59 11.28 7.83 -12.37 -0.10 11.18 15 8 O -0.55 -11.59 17.10 5.32 0.09 -11.50 15 9 N -0.67 -13.71 5.55 -62.45 -0.35 -14.05 15 10 C 0.22 5.22 4.50 -5.19 -0.02 5.20 15 11 C -0.55 -14.76 9.83 -34.44 -0.34 -15.10 15 12 H 0.08 2.37 7.84 -52.49 -0.41 1.96 15 13 C 0.08 2.21 5.47 -17.82 -0.10 2.11 15 14 N -0.89 -26.01 13.96 55.43 0.77 -25.23 15 15 Si 0.88 20.79 27.47 -169.99 -4.67 16.12 15 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 18 H -0.26 -6.07 6.54 56.52 0.37 -5.70 15 19 N -0.47 -7.63 11.09 -8.64 -0.10 -7.72 15 20 H 0.08 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.08 0.61 8.14 -51.93 -0.42 0.19 15 22 H 0.09 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.41 8.02 8.05 -40.82 -0.33 7.69 15 24 H 0.03 0.80 7.20 -51.93 -0.37 0.42 15 25 H 0.03 0.68 7.57 -51.93 -0.39 0.28 15 26 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 LS Contribution 241.84 15.07 3.64 3.64 Total: -1.00 -31.17 241.84 -6.33 -37.50 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -3.65 Total: 3.57 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -2.70 Total: 6.42 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.95 Total: -55.75 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.17 -6.33 -37.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087446915.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.144 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds