Wall clock time and date at job start Mon Mar 30 2020 02:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30928 * 125.76605 * 2 1 4 4 N 1.28868 * 109.00666 * 179.97438 * 3 2 1 5 5 H 0.96996 * 125.95281 * 179.97438 * 4 3 2 6 6 C 1.35191 * 108.09315 * 0.02562 * 4 3 2 7 7 C 1.47766 * 126.44523 * 180.02562 * 6 4 3 8 8 O 1.21557 * 120.00047 * 359.96984 * 7 6 4 9 9 N 1.34776 * 120.00091 * 179.97438 * 7 6 4 10 10 C 1.46504 * 120.00408 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47554 * 179.97438 * 10 9 7 12 12 H 1.08001 * 119.99840 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99705 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99655 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 120.00602 * 0.02562 * 13 11 10 16 16 H 1.48507 * 109.47143 * 89.99657 * 15 13 11 17 17 H 1.48494 * 109.47356 * 209.99687 * 15 13 11 18 18 H 1.48506 * 109.46703 * 330.00055 * 15 13 11 19 19 N 1.32154 * 107.10857 * 359.97438 * 6 4 3 20 20 H 1.09000 * 109.47481 * 270.00260 * 1 2 3 21 21 H 1.09001 * 109.46845 * 30.00511 * 1 2 3 22 22 H 1.09001 * 109.47056 * 149.99747 * 1 2 3 23 23 H 0.97003 * 120.00252 * 359.97438 * 9 7 6 24 24 H 1.09001 * 109.46918 * 300.00066 * 10 9 7 25 25 H 1.09003 * 109.46922 * 59.98920 * 10 9 7 26 26 H 0.97003 * 120.00015 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2722 1.0624 0.0000 4 7 3.5061 0.6908 0.0005 5 1 4.2778 1.2784 0.0003 6 6 3.5376 -0.6608 0.0003 7 6 4.7464 -1.5107 0.0013 8 8 5.8491 -0.9991 0.0019 9 7 4.6263 -2.8531 0.0015 10 6 5.8247 -3.6958 0.0019 11 6 5.4185 -5.1470 0.0027 12 1 4.3722 -5.4148 0.0024 13 6 6.3825 -6.1327 0.0026 14 7 6.0280 -7.3991 0.0028 15 14 8.1921 -5.6695 0.0023 16 1 8.6719 -5.5465 1.4024 17 1 8.9723 -6.7214 -0.6976 18 1 8.3708 -4.3721 -0.6979 19 7 2.2839 -1.0788 0.0002 20 1 -0.3634 0.0000 1.0276 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3633 -0.8900 -0.5139 23 1 3.7464 -3.2614 0.0013 24 1 6.4177 -3.4846 -0.8880 25 1 6.4174 -3.4842 0.8919 26 1 6.7062 -8.0927 0.0031 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087446915.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:38 Heat of formation + Delta-G solvation = 17.828021 kcal Electronic energy + Delta-G solvation = -13109.478712 eV Core-core repulsion = 10609.876908 eV Total energy + Delta-G solvation = -2499.601804 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.60905 -40.58965 -36.43249 -35.03676 -34.44939 -33.33039 -30.18559 -29.30141 -26.00226 -23.81687 -22.22789 -21.91673 -20.23910 -18.96763 -17.98093 -17.68052 -17.09085 -16.21980 -16.15057 -15.08483 -14.63449 -14.43390 -14.25752 -13.81889 -13.59394 -13.20525 -13.06528 -12.69845 -11.91869 -11.75228 -11.69155 -11.65569 -11.51985 -10.91642 -10.60399 -10.11306 -8.38000 -6.46902 -0.10127 1.24492 1.27619 1.37384 1.39689 1.50750 2.00345 2.26786 2.30601 2.94262 2.97110 3.38514 3.72952 4.67800 4.78877 4.81286 4.84123 4.97707 5.04141 5.18968 5.26525 5.36217 5.65678 6.01836 6.46111 6.58262 6.87482 6.97686 7.19727 8.76858 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.057554 B = 0.006867 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.380048 B = 4076.458629 C = 4542.392520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.178 3.822 3 N -0.301 5.301 4 N -0.350 5.350 5 H 0.466 0.534 6 C 0.171 3.829 7 C 0.595 3.405 8 O -0.567 6.567 9 N -0.671 5.671 10 C 0.230 3.770 11 C -0.552 4.552 12 H 0.057 0.943 13 C 0.026 3.974 14 N -0.931 5.931 15 Si 0.941 3.059 16 H -0.263 1.263 17 H -0.275 1.275 18 H -0.252 1.252 19 N -0.485 5.485 20 H 0.098 0.902 21 H 0.101 0.899 22 H 0.094 0.906 23 H 0.415 0.585 24 H 0.029 0.971 25 H 0.028 0.972 26 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.174 15.046 -0.007 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 N -0.140 5.140 4 N -0.075 5.075 5 H 0.316 0.684 6 C -0.107 4.107 7 C 0.377 3.623 8 O -0.446 6.446 9 N -0.320 5.320 10 C 0.108 3.892 11 C -0.590 4.590 12 H 0.075 0.925 13 C -0.174 4.174 14 N -0.570 5.570 15 Si 0.764 3.236 16 H -0.188 1.188 17 H -0.201 1.201 18 H -0.176 1.176 19 N -0.214 5.214 20 H 0.116 0.884 21 H 0.120 0.880 22 H 0.113 0.887 23 H 0.252 0.748 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.752 15.399 -0.010 16.814 hybrid contribution 1.104 -0.239 0.023 1.130 sum -5.648 15.159 0.014 16.177 Atomic orbital electron populations 1.20269 0.80380 1.05415 1.05162 1.25191 1.00488 0.83053 1.01360 1.74153 0.89661 1.27212 1.22979 1.44833 1.07790 1.06133 1.48742 0.68368 1.23952 0.94359 0.85107 1.07292 1.16660 0.85244 0.82515 0.77914 1.90793 1.26450 1.74178 1.53197 1.45849 1.12330 1.04227 1.69569 1.19366 0.84094 0.88713 0.97070 1.21241 0.95069 0.89447 1.53249 0.92528 1.25632 1.03953 0.94456 0.93370 1.69992 1.36063 1.00568 1.50334 0.85810 0.79130 0.79106 0.79587 1.18831 1.20059 1.17624 1.71208 0.98960 1.31631 1.19604 0.88351 0.88039 0.88736 0.74805 0.95325 0.95447 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.84 10.51 71.23 0.75 -0.09 15 2 C 0.18 4.56 8.14 138.66 1.13 5.69 15 3 N -0.30 -7.69 12.28 -51.39 -0.63 -8.32 15 4 N -0.35 -9.08 6.98 -51.88 -0.36 -9.44 15 5 H 0.47 9.45 8.96 -219.79 -1.97 7.48 15 6 C 0.17 5.45 8.03 136.70 1.10 6.55 15 7 C 0.59 22.43 7.83 86.76 0.68 23.11 15 8 O -0.57 -23.36 17.10 -3.90 -0.07 -23.43 15 9 N -0.67 -27.51 5.55 -469.78 -2.61 -30.12 15 10 C 0.23 10.90 4.50 85.63 0.38 11.28 15 11 C -0.55 -30.16 9.83 25.60 0.25 -29.90 15 12 H 0.06 3.31 7.84 -2.91 -0.02 3.29 15 13 C 0.03 1.46 5.47 84.65 0.46 1.93 15 14 N -0.93 -55.17 13.96 21.45 0.30 -54.87 15 15 Si 0.94 42.43 27.47 68.60 1.88 44.32 15 16 H -0.26 -11.47 7.11 99.48 0.71 -10.76 15 17 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 18 H -0.25 -10.97 6.54 99.48 0.65 -10.32 15 19 N -0.48 -15.08 11.09 -181.26 -2.01 -17.09 15 20 H 0.10 1.26 8.14 -2.39 -0.02 1.24 15 21 H 0.10 1.19 8.14 -2.39 -0.02 1.17 15 22 H 0.09 1.38 8.14 -2.39 -0.02 1.36 15 23 H 0.42 16.31 8.05 -92.71 -0.75 15.56 15 24 H 0.03 1.39 7.20 -2.39 -0.02 1.37 15 25 H 0.03 1.31 7.57 -2.39 -0.02 1.29 15 26 H 0.27 15.03 8.31 -92.71 -0.77 14.26 15 Total: -1.00 -65.50 241.84 -0.28 -65.78 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -1.54 Total: 14.60 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 4.75 Total: 18.57 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -5.31 Total: -119.84 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.07 Total: -23.43 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.88 Total: 44.32 kcal Total: -65.50 -0.28 -65.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087446915.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.607 kcal (2) G-P(sol) polarization free energy of solvation -65.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds