Wall clock time and date at job start Mon Mar 30 2020 02:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.46796 * 2 1 4 4 N 1.30874 * 126.18327 * 305.02357 * 3 2 1 5 5 C 1.34580 * 107.26792 * 179.73887 * 4 3 2 6 6 C 1.47747 * 126.05589 * 180.02562 * 5 4 3 7 7 O 1.21599 * 120.00017 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00509 * 180.02562 * 6 5 4 9 9 C 1.36876 * 120.00101 * 180.02562 * 8 6 5 10 10 H 1.07993 * 120.00161 * 0.02562 * 9 8 6 11 11 C 1.39045 * 119.99554 * 179.97438 * 9 8 6 12 12 N 1.31366 * 120.00340 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99673 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46764 * 90.00244 * 13 11 9 15 15 H 1.48495 * 109.47171 * 209.99939 * 13 11 9 16 16 H 1.48501 * 109.47265 * 330.00558 * 13 11 9 17 17 N 1.31570 * 107.89047 * 0.02562 * 5 4 3 18 18 N 1.28851 * 108.68811 * 359.97438 * 17 5 4 19 19 H 0.97002 * 125.73895 * 180.02562 * 18 17 5 20 20 H 1.08999 * 109.47059 * 59.99772 * 1 2 3 21 21 H 1.09000 * 109.46531 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47084 * 299.99808 * 1 2 3 23 23 H 1.08994 * 109.46813 * 240.00167 * 2 1 3 24 24 H 1.08999 * 109.47059 * 120.00228 * 2 1 3 25 25 H 0.97005 * 119.99435 * 0.02562 * 8 6 5 26 26 H 0.96998 * 120.00261 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7182 2.3513 -0.8650 5 6 2.3741 3.4698 -0.5044 6 6 2.3163 4.7734 -1.1974 7 8 1.6274 4.9039 -2.1909 8 7 3.0271 5.8181 -0.7284 9 6 2.9732 7.0259 -1.3701 10 1 2.3607 7.1419 -2.2519 11 6 3.7061 8.1037 -0.8859 12 7 4.4508 7.9627 0.1871 13 14 3.6330 9.7518 -1.7620 14 1 2.5292 10.5663 -1.1932 15 1 4.9213 10.4674 -1.5788 16 1 3.3904 9.5321 -3.2105 17 7 3.0758 3.1968 0.5745 18 7 2.8807 1.9636 0.8928 19 1 3.2783 1.5038 1.6488 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 3.5770 5.7139 0.0640 26 1 4.9624 8.7144 0.5247 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087448491.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:51 Heat of formation + Delta-G solvation = 10.727927 kcal Electronic energy + Delta-G solvation = -13216.417206 eV Core-core repulsion = 10716.507518 eV Total energy + Delta-G solvation = -2499.909687 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.41392 -39.97723 -36.17894 -35.35353 -34.26172 -33.44017 -31.08075 -27.66954 -25.21203 -25.00794 -22.15132 -21.29970 -20.19567 -19.06079 -18.03310 -17.41346 -16.75363 -15.88828 -15.56820 -15.27270 -15.04447 -14.69543 -13.76445 -13.59794 -12.98863 -12.95022 -12.51128 -12.48029 -12.10385 -12.02147 -11.67460 -11.53488 -11.45045 -10.82719 -10.47090 -10.16763 -8.57892 -6.06116 0.38445 1.15707 1.42149 1.48758 1.57024 1.81004 2.22138 2.39689 2.62981 3.19626 3.39626 3.48543 4.07614 4.34241 4.39836 4.66628 4.94048 5.05308 5.11697 5.30796 5.37341 5.47555 5.82099 6.02397 6.41027 6.92940 7.06611 7.37939 7.88147 8.59335 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.075489 B = 0.006807 C = 0.006344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.826905 B = 4112.264386 C = 4412.215908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.031 4.031 3 C 0.222 3.778 4 N -0.505 5.505 5 C 0.152 3.848 6 C 0.509 3.491 7 O -0.615 6.615 8 N -0.532 5.532 9 C -0.342 4.342 10 H 0.090 0.910 11 C -0.007 4.007 12 N -0.907 5.907 13 Si 1.007 2.993 14 H -0.266 1.266 15 H -0.265 1.265 16 H -0.268 1.268 17 N -0.297 5.297 18 N -0.383 5.383 19 H 0.467 0.533 20 H 0.040 0.960 21 H 0.099 0.901 22 H 0.050 0.950 23 H 0.111 0.889 24 H 0.132 0.868 25 H 0.402 0.598 26 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.309 -14.547 5.857 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.070 4.070 3 C -0.055 4.055 4 N -0.231 5.231 5 C -0.128 4.128 6 C 0.294 3.706 7 O -0.501 6.501 8 N -0.167 5.167 9 C -0.472 4.472 10 H 0.108 0.892 11 C -0.209 4.209 12 N -0.546 5.546 13 Si 0.828 3.172 14 H -0.191 1.191 15 H -0.190 1.190 16 H -0.193 1.193 17 N -0.139 5.139 18 N -0.108 5.108 19 H 0.318 0.682 20 H 0.059 0.941 21 H 0.117 0.883 22 H 0.069 0.931 23 H 0.129 0.871 24 H 0.150 0.850 25 H 0.236 0.764 26 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.492 -13.802 5.244 14.840 hybrid contribution 0.529 0.469 0.526 0.881 sum -0.962 -13.333 5.770 14.560 Atomic orbital electron populations 1.21714 0.93216 1.03719 1.01740 1.20407 0.97188 0.82411 1.07010 1.25975 0.92658 0.99679 0.87235 1.71146 1.25244 0.99128 1.27621 1.23680 0.98651 0.96234 0.94258 1.16479 0.85659 0.82263 0.86229 1.90580 1.46577 1.83848 1.29081 1.41695 1.39518 1.08690 1.26824 1.19896 1.28540 0.87164 1.11554 0.89185 1.26331 0.94373 1.03424 0.96757 1.69688 1.27782 1.34613 1.22512 0.84744 0.78487 0.75614 0.78341 1.19071 1.18952 1.19251 1.74273 1.23411 0.99741 1.16427 1.44938 1.34471 1.06387 1.25043 0.68172 0.94085 0.88260 0.93124 0.87131 0.85002 0.76356 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.88 71.98 0.71 -1.66 15 2 C -0.03 -0.46 6.56 29.85 0.20 -0.26 15 3 C 0.22 6.25 7.52 138.16 1.04 7.29 15 4 N -0.51 -21.27 11.38 -180.99 -2.06 -23.33 15 5 C 0.15 7.26 7.96 137.06 1.09 8.35 15 6 C 0.51 29.28 7.78 86.76 0.67 29.96 15 7 O -0.62 -39.49 16.67 -4.03 -0.07 -39.56 15 8 N -0.53 -30.75 5.28 -309.71 -1.63 -32.38 15 9 C -0.34 -20.42 9.68 84.10 0.81 -19.60 15 10 H 0.09 5.61 7.15 -2.91 -0.02 5.59 15 11 C -0.01 -0.37 5.50 84.96 0.47 0.10 15 12 N -0.91 -50.02 13.05 21.68 0.28 -49.74 15 13 Si 1.01 42.95 29.55 68.60 2.03 44.98 15 14 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 15 H -0.27 -10.54 7.11 99.48 0.71 -9.83 15 16 H -0.27 -11.44 7.11 99.48 0.71 -10.74 15 17 N -0.30 -11.75 11.98 -52.48 -0.63 -12.38 15 18 N -0.38 -10.21 6.93 -50.60 -0.35 -10.56 15 19 H 0.47 6.95 8.96 -219.79 -1.97 4.98 15 20 H 0.04 0.94 8.14 -2.39 -0.02 0.92 15 21 H 0.10 0.96 8.14 -2.39 -0.02 0.94 15 22 H 0.05 0.87 8.14 -2.39 -0.02 0.85 15 23 H 0.11 1.43 8.14 -2.39 -0.02 1.41 15 24 H 0.13 0.71 8.14 -2.39 -0.02 0.69 15 25 H 0.40 22.49 7.60 -92.70 -0.70 21.79 15 26 H 0.28 14.39 8.31 -92.71 -0.77 13.62 15 Total: -1.00 -79.89 243.76 1.12 -78.77 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -1.44 Total: 20.03 kcal Atomic # 6 Polarization: 19.17 SS G_CDS: 4.99 Total: 24.16 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -4.39 Total: -128.38 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.07 Total: -39.56 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -79.89 1.12 -78.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087448491.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.502 kcal (2) G-P(sol) polarization free energy of solvation -79.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds