Wall clock time and date at job start Mon Mar 30 2020 02:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38547 * 120.77349 * 2 1 4 4 C 1.38515 * 119.13736 * 180.26735 * 3 2 1 5 5 F 1.35103 * 119.65023 * 179.97438 * 4 3 2 6 6 N 1.32059 * 120.70414 * 0.02562 * 4 3 2 7 7 C 1.31907 * 121.68449 * 359.97438 * 6 4 3 8 8 C 1.38142 * 120.79991 * 0.02562 * 7 6 4 9 9 C 1.50702 * 120.39271 * 179.97438 * 8 7 6 10 10 H 1.09005 * 109.47046 * 145.01709 * 9 8 7 11 11 N 1.46904 * 109.46662 * 25.02303 * 9 8 7 12 12 C 1.50695 * 109.47033 * 265.02288 * 9 8 7 13 13 H 1.07994 * 120.00580 * 359.97438 * 12 9 8 14 14 C 1.37886 * 119.99690 * 179.97438 * 12 9 8 15 15 N 1.31515 * 119.99890 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 119.99917 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47004 * 60.00080 * 16 14 12 18 18 H 1.48495 * 109.47207 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47005 * 300.00195 * 16 14 12 20 20 H 1.08997 * 109.47320 * 269.72637 * 1 2 3 21 21 H 1.09002 * 109.46509 * 29.72379 * 1 2 3 22 22 H 1.08999 * 109.46900 * 149.71431 * 1 2 3 23 23 H 1.08005 * 120.42915 * 0.25235 * 3 2 1 24 24 H 1.08004 * 119.59948 * 180.02562 * 7 6 4 25 25 H 1.00901 * 111.00022 * 176.04544 * 11 9 8 26 26 H 1.00900 * 110.99726 * 299.99767 * 11 9 8 27 27 H 0.96999 * 119.99743 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2159 1.1904 0.0000 4 6 3.6005 1.1509 -0.0056 5 9 4.3021 2.3054 -0.0062 6 7 4.2421 -0.0034 -0.0115 7 6 3.5976 -1.1543 -0.0117 8 6 2.2167 -1.1917 -0.0062 9 6 1.4898 -2.5118 -0.0071 10 1 0.5793 -2.4256 0.5860 11 7 2.3554 -3.5478 0.5724 12 6 1.1338 -2.8883 -1.4222 13 1 1.4063 -2.2368 -2.2392 14 6 0.4602 -4.0649 -1.6738 15 7 0.1289 -4.8586 -0.6789 16 14 0.0183 -4.5313 -3.4279 17 1 1.2585 -4.6479 -4.2364 18 1 -0.6979 -5.8321 -3.4287 19 1 -0.8573 -3.4843 -4.0128 20 1 -0.3634 -0.0049 1.0276 21 1 -0.3632 0.8925 -0.5096 22 1 -0.3633 -0.8874 -0.5183 23 1 1.6957 2.1369 0.0041 24 1 4.1563 -2.0786 -0.0161 25 1 1.8681 -4.4285 0.6424 26 1 3.2067 -3.6469 0.0400 27 1 -0.3453 -5.6860 -0.8559 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104506603.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:41 Heat of formation + Delta-G solvation = -36.955439 kcal Electronic energy + Delta-G solvation = -13575.792417 eV Core-core repulsion = 11053.895062 eV Total energy + Delta-G solvation = -2521.897355 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.95403 -41.19164 -36.91023 -34.81521 -33.54186 -30.85655 -28.73443 -28.06104 -25.32042 -23.26028 -22.02142 -18.63701 -18.42394 -18.36790 -17.04954 -17.01021 -16.15391 -15.63783 -15.14103 -14.96373 -14.57451 -14.35563 -13.70456 -13.49581 -13.32394 -13.25155 -12.90279 -12.77390 -12.59257 -12.00095 -11.73551 -10.79254 -10.49499 -10.43229 -9.68500 -9.20420 -8.12586 -6.37381 0.08089 0.22035 1.40250 1.43172 1.49421 2.36604 2.66770 2.71577 3.06156 3.57846 3.92761 4.02084 4.06267 4.54059 4.61469 4.73370 4.84602 4.89875 4.93489 5.23864 5.39577 5.64232 5.70549 5.79160 6.04266 6.59823 6.72925 6.91742 7.10018 7.38641 8.81857 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.042926 B = 0.009109 C = 0.008818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.123542 B = 3073.046767 C = 3174.407633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.025 4.025 3 C -0.183 4.183 4 C 0.264 3.736 5 F -0.122 7.122 6 N -0.540 5.540 7 C 0.129 3.871 8 C -0.109 4.109 9 C 0.255 3.745 10 H 0.034 0.966 11 N -0.847 5.847 12 C -0.556 4.556 13 H 0.045 0.955 14 C 0.032 3.968 15 N -0.910 5.910 16 Si 0.952 3.048 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.273 1.273 20 H 0.087 0.913 21 H 0.094 0.906 22 H 0.068 0.932 23 H 0.175 0.825 24 H 0.168 0.832 25 H 0.350 0.650 26 H 0.319 0.681 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 7.679 0.348 7.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.033 4.033 3 C -0.204 4.204 4 C 0.110 3.890 5 F -0.101 7.101 6 N -0.255 5.255 7 C -0.026 4.026 8 C -0.112 4.112 9 C 0.144 3.856 10 H 0.052 0.948 11 N -0.377 5.377 12 C -0.595 4.595 13 H 0.063 0.937 14 C -0.169 4.169 15 N -0.549 5.549 16 Si 0.778 3.222 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.198 1.198 20 H 0.105 0.895 21 H 0.112 0.888 22 H 0.087 0.913 23 H 0.193 0.807 24 H 0.185 0.815 25 H 0.165 0.835 26 H 0.129 0.871 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.101 8.030 1.057 8.174 hybrid contribution -0.942 -0.816 -1.802 2.191 sum 0.158 7.214 -0.745 7.254 Atomic orbital electron populations 1.20871 0.88257 1.04298 1.03574 1.20364 0.98445 0.91023 0.93496 1.21827 0.91738 1.00972 1.05854 1.18294 0.87619 0.81527 1.01515 1.91555 1.80185 1.44518 1.93867 1.66928 1.43132 0.98470 1.17001 1.22313 0.91819 0.93824 0.94668 1.21357 0.95048 0.97466 0.97347 1.17706 0.90587 0.84830 0.92511 0.94825 1.59534 1.08959 1.13425 1.55733 1.21842 1.38184 1.05867 0.93641 0.93688 1.25595 0.94678 0.96186 1.00475 1.69802 1.40163 1.12716 1.32196 0.85703 0.78293 0.77463 0.80715 1.20286 1.20824 1.19837 0.89487 0.88771 0.91278 0.80734 0.81542 0.83482 0.87096 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.44 9.31 71.24 0.66 -2.78 15 2 C -0.03 -0.88 5.92 -19.68 -0.12 -1.00 15 3 C -0.18 -5.69 9.79 22.41 0.22 -5.47 15 4 C 0.26 9.33 8.41 84.72 0.71 10.04 15 5 F -0.12 -4.03 17.29 44.97 0.78 -3.25 15 6 N -0.54 -21.18 10.37 -196.92 -2.04 -23.23 15 7 C 0.13 5.13 10.43 84.66 0.88 6.01 15 8 C -0.11 -4.47 5.01 -19.77 -0.10 -4.57 15 9 C 0.25 11.70 2.29 43.42 0.10 11.80 15 10 H 0.03 1.69 7.10 -2.38 -0.02 1.68 15 11 N -0.85 -37.73 8.80 -174.94 -1.54 -39.27 15 12 C -0.56 -27.66 8.02 25.60 0.21 -27.46 15 13 H 0.04 2.30 7.74 -2.91 -0.02 2.27 15 14 C 0.03 1.60 5.38 84.66 0.46 2.05 15 15 N -0.91 -46.90 11.54 21.45 0.25 -46.66 15 16 Si 0.95 40.47 29.54 68.60 2.03 42.49 15 17 H -0.28 -11.78 7.11 99.48 0.71 -11.08 15 18 H -0.28 -11.83 7.11 99.48 0.71 -11.12 15 19 H -0.27 -11.43 7.11 99.48 0.71 -10.73 15 20 H 0.09 2.36 8.14 -2.39 -0.02 2.34 15 21 H 0.09 2.21 8.10 -2.39 -0.02 2.19 15 22 H 0.07 2.52 6.36 -2.39 -0.02 2.51 15 23 H 0.18 4.00 8.06 -2.91 -0.02 3.98 15 24 H 0.17 6.28 6.30 -2.91 -0.02 6.26 15 25 H 0.35 16.80 7.08 -89.69 -0.63 16.16 15 26 H 0.32 13.38 7.23 -89.69 -0.65 12.73 15 27 H 0.27 13.32 8.31 -92.71 -0.77 12.55 15 Total: -1.00 -53.94 237.82 2.43 -51.51 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.07 Total: 29.75 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 3.02 Total: -11.35 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -3.33 Total: -109.15 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.78 Total: -3.25 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.49 kcal Total: -53.94 2.43 -51.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104506603.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.554 kcal (2) G-P(sol) polarization free energy of solvation -53.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds