Wall clock time and date at job start Mon Mar 30 2020 02:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 11 11 N 1.46900 * 109.47676 * 59.99745 * 9 7 2 12 12 C 1.50707 * 109.47007 * 180.02562 * 9 7 2 13 13 C 1.38267 * 119.93579 * 264.99875 * 12 9 7 14 14 C 1.38096 * 120.09923 * 180.02562 * 13 12 9 15 15 C 1.38946 * 119.97084 * 359.97438 * 14 13 12 16 16 N 1.39670 * 120.05598 * 180.02562 * 15 14 13 17 17 C 1.38849 * 119.88297 * 0.02562 * 15 14 13 18 18 C 1.38341 * 119.89805 * 359.74303 * 17 15 14 19 19 F 1.35099 * 119.99142 * 180.27279 * 18 17 15 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.00899 * 110.99700 * 59.99648 * 11 9 7 22 22 H 1.00893 * 110.99909 * 183.95320 * 11 9 7 23 23 H 1.08000 * 119.95257 * 359.97438 * 13 12 9 24 24 H 1.08003 * 120.01264 * 179.97438 * 14 13 12 25 25 H 0.96995 * 120.00598 * 359.97438 * 16 15 14 26 26 H 0.97008 * 120.00032 * 180.02562 * 16 15 14 27 27 H 1.08000 * 120.04912 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8752 -0.6797 -0.8895 11 7 4.0008 -0.5023 1.2001 12 6 4.0139 -2.6150 -0.0013 13 6 4.3419 -3.2320 1.1917 14 6 4.8031 -4.5337 1.1943 15 6 4.9373 -5.2249 -0.0035 16 7 5.4031 -6.5417 -0.0029 17 6 4.6076 -4.6043 -1.2010 18 6 4.1416 -3.3018 -1.1972 19 9 3.8150 -2.6980 -2.3609 20 1 -0.4850 0.8401 0.0004 21 1 3.6770 -0.9604 2.0387 22 1 5.0073 -0.4323 1.1919 23 1 4.2381 -2.6949 2.1230 24 1 5.0593 -5.0142 2.1271 25 1 5.6335 -6.9743 0.8341 26 1 5.4968 -7.0234 -0.8397 27 1 4.7105 -5.1392 -2.1336 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104509234.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:47 Heat of formation + Delta-G solvation = -19.912105 kcal Electronic energy + Delta-G solvation = -13591.427292 eV Core-core repulsion = 11070.268991 eV Total energy + Delta-G solvation = -2521.158300 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.14434 -38.92317 -35.64563 -33.11501 -31.62678 -30.06265 -28.11683 -26.04626 -22.73216 -22.12183 -19.95914 -17.40623 -17.05186 -16.72715 -15.40525 -14.89207 -14.84810 -14.62285 -14.60747 -13.76046 -13.41721 -12.58535 -12.52198 -12.28476 -12.05658 -11.37431 -10.84632 -10.67891 -10.50535 -9.91861 -9.59437 -9.16698 -8.47082 -8.35211 -7.68555 -7.10562 -5.94634 -4.04207 1.69425 1.96483 3.62672 3.65645 3.79531 3.91518 4.17732 4.71137 5.00315 5.18739 5.29422 5.42097 5.68439 5.82039 5.93757 6.10534 6.39553 6.49326 6.73112 6.81935 7.14150 7.24646 7.64097 7.70289 7.83660 8.17267 8.35524 8.72911 9.05198 9.68543 11.14996 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.047797 B = 0.009707 C = 0.009194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.675783 B = 2883.834836 C = 3044.695476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.081 3.919 3 Si 0.937 3.063 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.319 1.319 7 C -0.513 4.513 8 H 0.070 0.930 9 C 0.222 3.778 10 H 0.052 0.948 11 N -0.840 5.840 12 C -0.153 4.153 13 C -0.055 4.055 14 C -0.207 4.207 15 C 0.217 3.783 16 N -0.882 5.882 17 C -0.237 4.237 18 C 0.149 3.851 19 F -0.133 7.133 20 H 0.263 0.737 21 H 0.334 0.666 22 H 0.311 0.689 23 H 0.126 0.874 24 H 0.117 0.883 25 H 0.396 0.604 26 H 0.395 0.605 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.712 -9.730 1.297 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.123 4.123 3 Si 0.769 3.231 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.249 1.249 7 C -0.551 4.551 8 H 0.088 0.912 9 C 0.112 3.888 10 H 0.069 0.931 11 N -0.370 5.370 12 C -0.157 4.157 13 C -0.074 4.074 14 C -0.230 4.230 15 C 0.114 3.886 16 N -0.422 5.422 17 C -0.260 4.260 18 C 0.128 3.872 19 F -0.112 7.112 20 H 0.072 0.928 21 H 0.149 0.851 22 H 0.123 0.877 23 H 0.144 0.856 24 H 0.135 0.865 25 H 0.223 0.777 26 H 0.222 0.778 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.098 -8.915 0.997 14.270 hybrid contribution 0.819 -0.486 0.027 0.953 sum 11.918 -9.401 1.023 15.214 Atomic orbital electron populations 1.69963 1.06798 1.27278 1.49776 1.25024 0.94605 1.00070 0.92578 0.85852 0.78492 0.80763 0.77951 1.20651 1.19944 1.24876 1.20734 0.87180 0.94523 1.52668 0.91198 1.18539 0.96383 0.83483 0.90351 0.93056 1.59344 1.12991 1.58517 1.06139 1.21085 1.01964 1.01394 0.91283 1.20573 0.95788 0.93622 0.97393 1.20492 1.10432 0.96115 0.95914 1.17294 0.93297 0.84965 0.93026 1.42315 1.76679 1.12259 1.10960 1.20352 1.12671 0.95448 0.97576 1.17224 0.97742 0.90546 0.81673 1.91477 1.89969 1.83343 1.46370 0.92774 0.85133 0.87704 0.85647 0.86478 0.77660 0.77792 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.33 13.96 55.43 0.77 -27.56 15 2 C 0.08 2.41 5.47 -17.82 -0.10 2.31 15 3 Si 0.94 24.44 26.03 -169.99 -4.42 20.01 15 4 H -0.28 -7.22 7.11 56.52 0.40 -6.82 15 5 H -0.27 -6.99 6.54 56.52 0.37 -6.62 15 6 H -0.32 -8.40 7.11 56.52 0.40 -8.00 15 7 C -0.51 -14.77 9.29 -34.44 -0.32 -15.09 15 8 H 0.07 2.22 7.98 -52.49 -0.42 1.80 15 9 C 0.22 5.30 2.11 -70.01 -0.15 5.16 15 10 H 0.05 1.32 6.85 -51.93 -0.36 0.96 15 11 N -0.84 -17.67 6.36 -6.65 -0.04 -17.71 15 12 C -0.15 -3.18 4.99 -104.51 -0.52 -3.70 15 13 C -0.05 -0.96 9.26 -39.62 -0.37 -1.33 15 14 C -0.21 -3.12 9.89 -39.37 -0.39 -3.51 15 15 C 0.22 3.19 6.75 -83.80 -0.57 2.63 15 16 N -0.88 -9.10 9.09 32.41 0.29 -8.81 15 17 C -0.24 -3.95 9.87 -39.32 -0.39 -4.34 15 18 C 0.15 3.02 7.24 -39.45 -0.29 2.73 15 19 F -0.13 -2.91 16.56 2.25 0.04 -2.88 15 20 H 0.26 7.78 8.31 -40.82 -0.34 7.44 15 21 H 0.33 6.59 7.20 -39.29 -0.28 6.31 15 22 H 0.31 5.59 9.06 -39.30 -0.36 5.23 15 23 H 0.13 2.01 6.28 -52.49 -0.33 1.68 15 24 H 0.12 1.43 8.06 -52.48 -0.42 1.01 15 25 H 0.40 3.21 8.84 -40.82 -0.36 2.85 15 26 H 0.39 3.35 8.84 -40.82 -0.36 2.99 15 27 H 0.12 1.78 8.06 -52.49 -0.42 1.36 15 LS Contribution 237.12 15.07 3.57 3.57 Total: -1.00 -32.97 237.12 -5.35 -38.32 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -2.48 Total: 10.20 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -3.08 Total: -15.15 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 1.03 Total: -54.08 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -4.42 Total: 20.01 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -32.97 -5.35 -38.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104509234.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.404 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds