Wall clock time and date at job start Mon Mar 30 2020 02:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 11 11 N 1.46900 * 109.47676 * 59.99745 * 9 7 2 12 12 C 1.50707 * 109.47007 * 180.02562 * 9 7 2 13 13 C 1.38267 * 119.93579 * 264.99875 * 12 9 7 14 14 C 1.38096 * 120.09923 * 180.02562 * 13 12 9 15 15 C 1.38946 * 119.97084 * 359.97438 * 14 13 12 16 16 N 1.39670 * 120.05598 * 180.02562 * 15 14 13 17 17 C 1.38849 * 119.88297 * 0.02562 * 15 14 13 18 18 C 1.38341 * 119.89805 * 359.74303 * 17 15 14 19 19 F 1.35099 * 119.99142 * 180.27279 * 18 17 15 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.00899 * 110.99700 * 59.99648 * 11 9 7 22 22 H 1.00893 * 110.99909 * 183.95320 * 11 9 7 23 23 H 1.08000 * 119.95257 * 359.97438 * 13 12 9 24 24 H 1.08003 * 120.01264 * 179.97438 * 14 13 12 25 25 H 0.96995 * 120.00598 * 359.97438 * 16 15 14 26 26 H 0.97008 * 120.00032 * 180.02562 * 16 15 14 27 27 H 1.08000 * 120.04912 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8752 -0.6797 -0.8895 11 7 4.0008 -0.5023 1.2001 12 6 4.0139 -2.6150 -0.0013 13 6 4.3419 -3.2320 1.1917 14 6 4.8031 -4.5337 1.1943 15 6 4.9373 -5.2249 -0.0035 16 7 5.4031 -6.5417 -0.0029 17 6 4.6076 -4.6043 -1.2010 18 6 4.1416 -3.3018 -1.1972 19 9 3.8150 -2.6980 -2.3609 20 1 -0.4850 0.8401 0.0004 21 1 3.6770 -0.9604 2.0387 22 1 5.0073 -0.4323 1.1919 23 1 4.2381 -2.6949 2.1230 24 1 5.0593 -5.0142 2.1271 25 1 5.6335 -6.9743 0.8341 26 1 5.4968 -7.0234 -0.8397 27 1 4.7105 -5.1392 -2.1336 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104509234.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:46 Heat of formation + Delta-G solvation = -46.000101 kcal Electronic energy + Delta-G solvation = -13592.558552 eV Core-core repulsion = 11070.268991 eV Total energy + Delta-G solvation = -2522.289561 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.72701 -40.25412 -37.20301 -34.69565 -33.58998 -31.39725 -29.55628 -27.99192 -24.30980 -23.53274 -21.59536 -19.06676 -18.66432 -18.12446 -16.97030 -16.55105 -16.32742 -16.27263 -15.95980 -15.61716 -14.87582 -14.38429 -14.06422 -13.79947 -13.58141 -13.20206 -12.68712 -12.43409 -12.03711 -11.75161 -11.58296 -10.96214 -10.73712 -9.70207 -9.39311 -8.34506 -8.23090 -6.36179 0.35588 0.60573 1.50659 1.57747 1.71625 2.53865 2.80910 2.93204 3.10627 3.66127 3.92875 4.15914 4.21534 4.22693 4.53398 4.82502 4.99423 5.11694 5.26603 5.36745 5.50309 5.72783 5.95004 6.14975 6.47940 6.57592 6.76750 7.02011 7.05039 7.39952 8.89839 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.047797 B = 0.009707 C = 0.009194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.675783 B = 2883.834836 C = 3044.695476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.025 3.975 3 Si 1.002 2.998 4 H -0.269 1.269 5 H -0.266 1.266 6 H -0.324 1.324 7 C -0.511 4.511 8 H 0.025 0.975 9 C 0.233 3.767 10 H 0.029 0.971 11 N -0.840 5.840 12 C -0.191 4.191 13 C -0.055 4.055 14 C -0.200 4.200 15 C 0.233 3.767 16 N -0.859 5.859 17 C -0.241 4.241 18 C 0.116 3.884 19 F -0.155 7.155 20 H 0.265 0.735 21 H 0.343 0.657 22 H 0.335 0.665 23 H 0.139 0.861 24 H 0.155 0.845 25 H 0.412 0.588 26 H 0.407 0.593 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.084 -11.124 2.509 18.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.174 4.174 3 Si 0.832 3.168 4 H -0.194 1.194 5 H -0.191 1.191 6 H -0.254 1.254 7 C -0.549 4.549 8 H 0.043 0.957 9 C 0.123 3.877 10 H 0.047 0.953 11 N -0.372 5.372 12 C -0.196 4.196 13 C -0.074 4.074 14 C -0.223 4.223 15 C 0.127 3.873 16 N -0.400 5.400 17 C -0.265 4.265 18 C 0.096 3.904 19 F -0.133 7.133 20 H 0.073 0.927 21 H 0.159 0.841 22 H 0.148 0.852 23 H 0.156 0.844 24 H 0.173 0.827 25 H 0.242 0.758 26 H 0.237 0.763 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 13.515 -10.372 2.223 17.181 hybrid contribution 0.135 -0.291 -0.327 0.458 sum 13.651 -10.663 1.897 17.425 Atomic orbital electron populations 1.70093 1.08517 1.28148 1.52181 1.25888 0.95238 1.03665 0.92583 0.84816 0.77205 0.76409 0.78383 1.19426 1.19125 1.25399 1.20975 0.90135 0.92509 1.51298 0.95702 1.18048 0.93085 0.86090 0.90505 0.95289 1.58978 1.14772 1.58123 1.05373 1.20857 1.05435 1.00292 0.93038 1.20754 0.95304 0.94816 0.96527 1.20856 1.08777 0.95046 0.97599 1.17395 0.91430 0.86343 0.92176 1.42287 1.74605 1.10425 1.12713 1.20527 1.12366 0.94179 0.99455 1.17648 0.99619 0.92171 0.81000 1.91410 1.90526 1.83978 1.47434 0.92677 0.84133 0.85167 0.84385 0.82711 0.75769 0.76312 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.73 13.96 21.45 0.30 -61.43 15 2 C 0.02 1.51 5.47 84.66 0.46 1.97 15 3 Si 1.00 51.07 26.03 68.60 1.79 52.86 15 4 H -0.27 -13.10 7.11 99.48 0.71 -12.39 15 5 H -0.27 -13.09 6.54 99.48 0.65 -12.44 15 6 H -0.32 -16.60 7.11 99.48 0.71 -15.89 15 7 C -0.51 -30.42 9.29 25.60 0.24 -30.18 15 8 H 0.02 1.65 7.98 -2.91 -0.02 1.63 15 9 C 0.23 11.26 2.11 43.42 0.09 11.35 15 10 H 0.03 1.52 6.85 -2.38 -0.02 1.51 15 11 N -0.84 -34.25 6.36 -174.94 -1.11 -35.37 15 12 C -0.19 -7.97 4.99 -19.79 -0.10 -8.07 15 13 C -0.06 -1.82 9.26 22.24 0.21 -1.62 15 14 C -0.20 -5.29 9.89 22.41 0.22 -5.06 15 15 C 0.23 6.01 6.75 38.21 0.26 6.27 15 16 N -0.86 -13.68 9.09 -51.39 -0.47 -14.15 15 17 C -0.24 -7.63 9.87 22.44 0.22 -7.41 15 18 C 0.12 4.73 7.24 22.36 0.16 4.89 15 19 F -0.15 -7.03 16.56 44.97 0.74 -6.29 15 20 H 0.26 16.15 8.31 -92.71 -0.77 15.38 15 21 H 0.34 13.02 7.20 -89.70 -0.65 12.37 15 22 H 0.33 11.31 9.06 -89.70 -0.81 10.49 15 23 H 0.14 4.10 6.28 -2.91 -0.02 4.08 15 24 H 0.16 2.92 8.06 -2.91 -0.02 2.90 15 25 H 0.41 4.46 8.84 -92.71 -0.82 3.64 15 26 H 0.41 5.04 8.84 -92.70 -0.82 4.22 15 27 H 0.14 3.82 8.06 -2.91 -0.02 3.80 15 Total: -1.00 -74.05 237.12 1.10 -72.95 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -1.91 Total: 19.30 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 1.76 Total: -27.87 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -1.28 Total: -110.95 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 0.74 Total: -6.29 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 1.79 Total: 52.86 kcal Total: -74.05 1.10 -72.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104509234.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.949 kcal (2) G-P(sol) polarization free energy of solvation -74.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds