Wall clock time and date at job start Mon Mar 30 2020 02:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31876 * 119.63695 * 2 1 4 4 C 1.31844 * 121.75017 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.59091 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.47697 * 185.00184 * 5 4 3 7 7 N 1.46898 * 109.47283 * 64.99870 * 5 4 3 8 8 C 1.50709 * 109.47236 * 304.99848 * 5 4 3 9 9 H 1.08001 * 119.99659 * 34.92603 * 8 5 4 10 10 C 1.37869 * 120.00067 * 214.92455 * 8 5 4 11 11 N 1.31513 * 120.00122 * 184.77816 * 10 8 5 12 12 Si 1.86798 * 120.00390 * 4.78325 * 10 8 5 13 13 H 1.48506 * 109.47424 * 84.86917 * 12 10 8 14 14 H 1.48500 * 109.47434 * 204.87185 * 12 10 8 15 15 H 1.48505 * 109.47152 * 324.87288 * 12 10 8 16 16 C 1.38237 * 120.81986 * 359.97438 * 4 3 2 17 17 C 1.38590 * 119.19139 * 0.02562 * 16 4 3 18 18 C 1.38418 * 119.63733 * 180.02562 * 2 1 3 19 19 F 1.35100 * 120.44515 * 359.97118 * 18 2 1 20 20 H 1.09003 * 109.47076 * 269.98309 * 1 2 3 21 21 H 1.09000 * 109.47010 * 29.97377 * 1 2 3 22 22 H 1.08995 * 109.47674 * 149.97529 * 1 2 3 23 23 H 1.00903 * 110.99911 * 174.44749 * 7 5 4 24 24 H 1.00902 * 111.00091 * 298.39954 * 7 5 4 25 25 H 0.97007 * 120.00558 * 179.97438 * 11 10 8 26 26 H 1.08000 * 120.40398 * 180.02562 * 16 4 3 27 27 H 1.08002 * 120.80257 * 180.24990 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1591 1.1462 0.0000 4 6 3.4766 1.1949 -0.0005 5 6 4.1719 2.5318 0.0001 6 1 5.2479 2.3819 -0.0900 7 7 3.8791 3.2355 1.2559 8 6 3.6802 3.3543 -1.1631 9 1 2.6512 3.2775 -1.4820 10 6 4.5440 4.2047 -1.8200 11 7 4.0942 4.9914 -2.7731 12 14 6.3532 4.2396 -1.3565 13 1 7.0729 3.1676 -2.0900 14 1 6.9311 5.5594 -1.7162 15 1 6.4940 4.0195 0.1054 16 6 4.2281 0.0346 -0.0005 17 6 3.5802 -1.1905 -0.0005 18 6 2.1914 -1.2031 -0.0005 19 9 1.5176 -2.3741 -0.0005 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3634 -0.8897 -0.5142 23 1 4.4052 4.0941 1.3205 24 1 2.8897 3.4097 1.3505 25 1 4.7018 5.5901 -3.2351 26 1 5.3071 0.0823 -0.0005 27 1 4.1416 -2.1131 0.0035 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104518545.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:28 Heat of formation + Delta-G solvation = -41.732308 kcal Electronic energy + Delta-G solvation = -13480.791485 eV Core-core repulsion = 10958.686989 eV Total energy + Delta-G solvation = -2522.104495 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.91404 -41.12402 -36.68494 -34.20039 -33.81113 -32.08446 -28.99071 -27.95654 -25.12376 -23.42420 -21.97519 -19.29175 -18.51431 -17.97517 -17.31532 -16.84299 -16.24748 -15.69812 -14.92069 -14.84016 -14.72224 -14.67299 -14.09977 -13.62462 -13.56244 -13.17598 -12.98872 -12.90011 -12.54505 -11.83495 -11.66024 -10.84779 -10.74789 -10.38922 -9.71377 -9.26397 -8.33722 -6.42243 0.02167 0.24390 1.36332 1.37703 1.48377 2.30633 2.69030 3.03192 3.10133 3.38642 3.73502 3.75491 4.01319 4.32985 4.51773 4.63073 4.69673 4.74938 4.78414 4.93768 5.10043 5.24959 5.47019 5.77672 6.18658 6.47629 6.65999 6.82613 7.11886 7.26337 8.82759 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.044810 B = 0.009296 C = 0.008714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.711744 B = 3011.404476 C = 3212.572958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.085 3.915 3 N -0.476 5.476 4 C 0.151 3.849 5 C 0.226 3.774 6 H 0.065 0.935 7 N -0.838 5.838 8 C -0.541 4.541 9 H 0.031 0.969 10 C 0.016 3.984 11 N -0.943 5.943 12 Si 0.944 3.056 13 H -0.262 1.262 14 H -0.288 1.288 15 H -0.235 1.235 16 C -0.160 4.160 17 C -0.094 4.094 18 C 0.016 3.984 19 F -0.131 7.131 20 H 0.094 0.906 21 H 0.072 0.928 22 H 0.090 0.910 23 H 0.334 0.666 24 H 0.333 0.667 25 H 0.268 0.732 26 H 0.163 0.837 27 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.332 -11.715 6.763 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.055 4.055 3 N -0.186 5.186 4 C 0.012 3.988 5 C 0.116 3.884 6 H 0.083 0.917 7 N -0.365 5.365 8 C -0.581 4.581 9 H 0.049 0.951 10 C -0.183 4.183 11 N -0.582 5.582 12 Si 0.766 3.234 13 H -0.187 1.187 14 H -0.214 1.214 15 H -0.158 1.158 16 C -0.181 4.181 17 C -0.120 4.120 18 C -0.006 4.006 19 F -0.110 7.110 20 H 0.113 0.887 21 H 0.091 0.909 22 H 0.109 0.891 23 H 0.145 0.855 24 H 0.144 0.856 25 H 0.077 0.923 26 H 0.180 0.820 27 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 0.183 -11.506 7.012 13.476 hybrid contribution 0.471 0.342 -1.078 1.225 sum 0.654 -11.164 5.934 12.660 Atomic orbital electron populations 1.20719 0.86690 1.03970 1.04245 1.21947 0.99129 0.87137 0.97252 1.67380 1.10804 1.28121 1.12293 1.21641 0.89178 0.96604 0.91329 1.18264 0.94724 0.87487 0.87972 0.91690 1.59495 1.12551 1.28121 1.36335 1.21795 0.97334 1.23041 1.15970 0.95102 1.26057 1.03974 0.94092 0.94186 1.70077 1.37629 1.24924 1.25540 0.85786 0.78775 0.77883 0.80948 1.18728 1.21404 1.15764 1.22135 1.02812 0.91280 1.01841 1.21874 0.92094 1.00446 0.97553 1.18547 0.91474 0.81918 1.08643 1.91459 1.80194 1.45010 1.94306 0.88729 0.90949 0.89087 0.85471 0.85559 0.92341 0.81975 0.80216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.77 10.00 71.23 0.71 -2.06 15 2 C 0.09 3.02 6.79 42.59 0.29 3.31 15 3 N -0.48 -20.34 9.75 -171.92 -1.68 -22.02 15 4 C 0.15 6.34 5.73 42.55 0.24 6.59 15 5 C 0.23 10.29 2.71 43.42 0.12 10.41 15 6 H 0.07 2.81 5.03 -2.38 -0.01 2.79 15 7 N -0.84 -35.02 9.20 -174.94 -1.61 -36.63 15 8 C -0.54 -30.26 8.99 25.60 0.23 -30.03 15 9 H 0.03 2.00 7.87 -2.91 -0.02 1.98 15 10 C 0.02 0.89 5.47 84.65 0.46 1.36 15 11 N -0.94 -57.65 13.96 21.44 0.30 -57.35 15 12 Si 0.94 41.15 26.99 68.60 1.85 43.00 15 13 H -0.26 -10.95 7.11 99.48 0.71 -10.24 15 14 H -0.29 -12.59 7.11 99.48 0.71 -11.88 15 15 H -0.23 -9.19 6.82 99.48 0.68 -8.51 15 16 C -0.16 -5.37 9.71 22.35 0.22 -5.15 15 17 C -0.09 -2.66 10.16 22.51 0.23 -2.44 15 18 C 0.02 0.50 7.27 22.47 0.16 0.66 15 19 F -0.13 -3.67 16.49 44.97 0.74 -2.93 15 20 H 0.09 2.27 8.14 -2.39 -0.02 2.25 15 21 H 0.07 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.09 2.15 7.63 -2.39 -0.02 2.13 15 23 H 0.33 13.40 9.07 -89.69 -0.81 12.58 15 24 H 0.33 14.34 8.95 -89.69 -0.80 13.54 15 25 H 0.27 15.27 8.31 -92.70 -0.77 14.50 15 26 H 0.16 4.48 7.95 -2.91 -0.02 4.46 15 27 H 0.18 3.55 8.06 -2.91 -0.02 3.53 15 Total: -1.00 -65.86 243.40 1.84 -64.02 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: -0.43 Total: 29.26 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 2.66 Total: -17.35 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -2.99 Total: -116.00 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.74 Total: -2.93 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.85 Total: 43.00 kcal Total: -65.86 1.84 -64.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104518545.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.289 kcal (2) G-P(sol) polarization free energy of solvation -65.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds