Wall clock time and date at job start Mon Mar 30 2020 02:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38544 * 120.43035 * 2 1 4 4 C 1.38705 * 118.45210 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.38883 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47401 * 339.99814 * 5 4 3 7 7 N 1.46908 * 109.46830 * 220.00065 * 5 4 3 8 8 C 1.50695 * 109.47226 * 100.00134 * 5 4 3 9 9 H 1.07993 * 120.00371 * 34.91024 * 8 5 4 10 10 C 1.37884 * 120.00060 * 214.91261 * 8 5 4 11 11 N 1.31507 * 120.00364 * 184.79523 * 10 8 5 12 12 Si 1.86801 * 119.99582 * 4.78966 * 10 8 5 13 13 H 1.48502 * 109.46894 * 84.88012 * 12 10 8 14 14 H 1.48505 * 109.46816 * 204.87394 * 12 10 8 15 15 H 1.48492 * 109.47460 * 324.87673 * 12 10 8 16 16 C 1.38148 * 119.22189 * 0.02562 * 4 3 2 17 17 N 1.31904 * 120.79495 * 0.02562 * 16 4 3 18 18 C 1.32060 * 121.68954 * 359.65832 * 17 16 4 19 19 F 1.35100 * 119.64795 * 180.31424 * 18 17 16 20 20 H 1.09001 * 109.47036 * 89.99381 * 1 2 3 21 21 H 1.09004 * 109.47033 * 329.99833 * 1 2 3 22 22 H 1.08993 * 109.47200 * 209.99743 * 1 2 3 23 23 H 1.08002 * 120.77660 * 0.03139 * 3 2 1 24 24 H 1.00895 * 110.99552 * 173.85718 * 7 5 4 25 25 H 1.00904 * 110.99384 * 297.80795 * 7 5 4 26 26 H 0.96995 * 120.00658 * 179.97438 * 11 10 8 27 27 H 1.07998 * 119.60086 * 179.97438 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2087 1.1946 0.0000 4 6 3.5949 1.1467 -0.0005 5 6 4.4017 2.4196 0.0000 6 1 3.7805 3.2437 -0.3507 7 7 5.5597 2.2657 -0.8909 8 6 4.8796 2.7109 1.3992 9 1 5.1465 1.8985 2.0588 10 6 4.9760 4.0147 1.8374 11 7 5.4814 4.2741 3.0234 12 14 4.3887 5.4125 0.7462 13 1 2.9280 5.6053 0.9320 14 1 5.1035 6.6612 1.1138 15 1 4.6677 5.0823 -0.6744 16 6 4.2273 -0.0815 -0.0016 17 7 3.5291 -1.2006 -0.0026 18 6 2.2085 -1.1944 0.0041 19 9 1.5347 -2.3653 0.0092 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 0.8900 0.5139 22 1 -0.3633 -0.8899 0.5138 23 1 1.6885 2.1411 0.0005 24 1 6.0607 3.1363 -0.9861 25 1 6.1702 1.5307 -0.5665 26 1 5.5496 5.1913 3.3315 27 1 5.3064 -0.1259 -0.0025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104521816.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:35 Heat of formation + Delta-G solvation = -18.646657 kcal Electronic energy + Delta-G solvation = -13458.067973 eV Core-core repulsion = 10936.964546 eV Total energy + Delta-G solvation = -2521.103426 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.58714 -39.71038 -35.22757 -33.41840 -32.16875 -30.14773 -27.00348 -26.37298 -23.29214 -22.75092 -19.90461 -17.60282 -17.52549 -16.64311 -15.70837 -15.32092 -14.54018 -13.86197 -13.70141 -13.38948 -13.23041 -12.86368 -12.64865 -12.48844 -12.37212 -11.78737 -11.65056 -11.19816 -10.85787 -10.23591 -9.84735 -9.28464 -9.07768 -8.86301 -8.25788 -7.60015 -6.35460 -4.40904 1.43937 1.65331 3.09625 3.19547 3.20398 4.05022 4.11442 4.15951 4.87863 4.97369 5.10623 5.19091 5.45561 5.66313 5.68097 5.84706 6.06534 6.08307 6.27451 6.42318 6.44734 6.97540 7.15083 7.31248 8.03557 8.13232 8.20019 8.40965 8.69836 9.23896 10.76570 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.042802 B = 0.009283 C = 0.008674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.018926 B = 3015.381506 C = 3227.151545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.158 4.158 3 C -0.062 4.062 4 C -0.070 4.070 5 C 0.214 3.786 6 H 0.055 0.945 7 N -0.853 5.853 8 C -0.551 4.551 9 H 0.076 0.924 10 C 0.080 3.920 11 N -0.884 5.884 12 Si 0.874 3.126 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.260 1.260 16 C 0.131 3.869 17 N -0.511 5.511 18 C 0.268 3.732 19 F -0.125 7.125 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.138 0.862 24 H 0.333 0.667 25 H 0.328 0.672 26 H 0.268 0.732 27 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.687 -3.887 -6.319 9.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.161 4.161 3 C -0.088 4.088 4 C -0.073 4.073 5 C 0.104 3.896 6 H 0.073 0.927 7 N -0.381 5.381 8 C -0.590 4.590 9 H 0.094 0.906 10 C -0.126 4.126 11 N -0.520 5.520 12 Si 0.700 3.300 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.184 1.184 16 C -0.026 4.026 17 N -0.225 5.225 18 C 0.114 3.886 19 F -0.104 7.104 20 H 0.089 0.911 21 H 0.091 0.909 22 H 0.087 0.913 23 H 0.156 0.844 24 H 0.145 0.855 25 H 0.139 0.861 26 H 0.078 0.922 27 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.783 -4.773 -6.754 10.696 hybrid contribution -0.222 1.640 0.621 1.767 sum -7.006 -3.134 -6.132 9.824 Atomic orbital electron populations 1.20635 0.89931 1.03213 1.02476 1.20488 0.97653 0.92400 1.05564 1.21228 0.93658 0.97223 0.96651 1.21211 0.94046 0.97800 0.94252 1.18349 0.89475 0.89569 0.92239 0.92689 1.59613 1.13016 1.11190 1.54282 1.21587 1.45383 0.94103 0.97960 0.90580 1.25098 0.93847 0.98729 0.94890 1.69891 1.43021 1.20586 1.18524 0.86895 0.79624 0.81844 0.81618 1.19812 1.21118 1.18395 1.22189 0.99693 0.85595 0.95097 1.66932 1.06471 1.33864 1.15185 1.17843 0.87396 0.80583 1.02765 1.91526 1.78248 1.46719 1.93932 0.91051 0.90931 0.91301 0.84438 0.85508 0.86070 0.92155 0.82150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.86 36.01 0.36 -0.97 15 2 C -0.16 -2.63 5.90 -104.41 -0.62 -3.25 15 3 C -0.06 -1.11 9.50 -39.30 -0.37 -1.48 15 4 C -0.07 -1.41 4.95 -104.48 -0.52 -1.92 15 5 C 0.21 4.60 2.64 -70.01 -0.18 4.41 15 6 H 0.06 1.20 5.19 -51.93 -0.27 0.93 15 7 N -0.85 -16.56 9.02 -6.65 -0.06 -16.62 15 8 C -0.55 -14.11 9.11 -34.44 -0.31 -14.42 15 9 H 0.08 2.18 8.06 -52.49 -0.42 1.75 15 10 C 0.08 2.10 5.47 -17.82 -0.10 2.01 15 11 N -0.88 -25.23 13.96 55.43 0.77 -24.46 15 12 Si 0.87 19.48 26.99 -169.99 -4.59 14.89 15 13 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 14 H -0.29 -6.42 7.11 56.52 0.40 -6.02 15 15 H -0.26 -5.47 6.82 56.52 0.39 -5.09 15 16 C 0.13 2.56 10.47 -17.55 -0.18 2.37 15 17 N -0.51 -10.12 10.37 -13.59 -0.14 -10.26 15 18 C 0.27 4.94 8.36 -17.35 -0.15 4.79 15 19 F -0.12 -2.17 16.51 2.25 0.04 -2.13 15 20 H 0.07 0.79 8.14 -51.93 -0.42 0.36 15 21 H 0.07 0.82 8.10 -51.93 -0.42 0.40 15 22 H 0.07 0.82 7.65 -51.93 -0.40 0.42 15 23 H 0.14 2.21 8.06 -52.49 -0.42 1.79 15 24 H 0.33 6.41 9.07 -39.29 -0.36 6.05 15 25 H 0.33 5.99 7.44 -39.29 -0.29 5.70 15 26 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 27 H 0.16 2.88 6.72 -52.49 -0.35 2.53 15 LS Contribution 240.89 15.07 3.63 3.63 Total: -1.00 -28.40 240.89 -4.93 -33.33 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -2.51 Total: 10.08 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -2.08 Total: -8.46 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.57 Total: -51.33 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.59 Total: 14.89 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.40 -4.93 -33.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104521816.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.682 kcal (2) G-P(sol) polarization free energy of solvation -28.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds