Wall clock time and date at job start Mon Mar 30 2020 02:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00307 * 2 1 4 4 H 1.48501 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46821 * 299.99877 * 3 2 1 6 6 H 1.48494 * 109.47204 * 60.00209 * 3 2 1 7 7 C 1.37880 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99815 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47374 * 59.99971 * 9 7 2 11 11 N 1.46902 * 109.47181 * 299.99609 * 9 7 2 12 12 C 1.50706 * 109.47178 * 180.02562 * 9 7 2 13 13 C 1.38140 * 120.02497 * 99.71993 * 12 9 7 14 14 C 1.38446 * 120.04501 * 179.76990 * 13 12 9 15 15 F 1.35095 * 119.95097 * 180.25334 * 14 13 12 16 16 C 1.38488 * 120.10105 * 0.50754 * 14 13 12 17 17 C 1.38101 * 120.04768 * 359.74797 * 16 14 13 18 18 C 1.38855 * 120.02195 * 279.99402 * 12 9 7 19 19 N 1.39826 * 120.04797 * 0.02562 * 18 12 9 20 20 H 0.97001 * 119.99839 * 359.97438 * 1 2 3 21 21 H 1.00893 * 111.00154 * 176.04614 * 11 9 7 22 22 H 1.00903 * 110.99827 * 300.00788 * 11 9 7 23 23 H 1.07996 * 119.97784 * 0.02562 * 13 12 9 24 24 H 1.07996 * 119.97691 * 179.72477 * 16 14 13 25 25 H 1.08000 * 120.02570 * 179.97438 * 17 16 14 26 26 H 0.96992 * 120.00079 * 359.97438 * 19 18 12 27 27 H 0.97001 * 119.99255 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 1 0.6246 -2.5563 -0.8919 11 7 0.4060 -2.5778 1.1974 12 6 2.2302 -3.6447 -0.0015 13 6 2.5249 -4.3018 1.1773 14 6 3.4209 -5.3573 1.1772 15 9 3.7038 -6.0019 2.3303 16 6 4.0314 -5.7499 -0.0021 17 6 3.7437 -5.0924 -1.1820 18 6 2.8411 -4.0366 -1.1852 19 7 2.5490 -3.3688 -2.3784 20 1 -0.4850 0.8401 0.0004 21 1 -0.1580 -3.4143 1.1881 22 1 0.9637 -2.5268 2.0367 23 1 2.0530 -3.9947 2.0989 24 1 4.7334 -6.5707 0.0009 25 1 4.2204 -5.3986 -2.1015 26 1 1.9189 -2.6314 -2.3797 27 1 2.9765 -3.6431 -3.2048 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104577542.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:26 Heat of formation + Delta-G solvation = -20.839329 kcal Electronic energy + Delta-G solvation = -13602.561899 eV Core-core repulsion = 11081.363391 eV Total energy + Delta-G solvation = -2521.198508 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.19873 -38.93017 -34.53785 -33.63614 -31.74262 -29.27721 -27.57986 -26.07720 -23.25577 -21.46732 -20.07713 -16.81674 -16.69495 -16.52071 -16.10776 -14.92965 -14.61830 -14.46621 -14.09837 -13.43155 -13.02328 -12.73510 -12.41951 -12.27677 -11.98235 -11.11374 -10.89619 -10.80082 -10.45713 -9.82438 -9.78373 -9.33361 -8.51497 -8.20523 -7.14692 -6.76885 -5.92992 -4.09210 1.88696 2.01458 3.28696 3.38108 3.42056 4.28247 4.47091 4.54124 4.97585 5.29107 5.34339 5.42135 5.81246 6.00017 6.23629 6.38762 6.50088 6.75971 6.84645 6.87991 7.39484 7.45182 7.86383 8.05725 8.14165 8.42808 8.59623 8.96280 9.10195 9.60451 11.09992 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.036754 B = 0.009964 C = 0.009204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.633745 B = 2809.330738 C = 3041.408339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.084 3.916 3 Si 0.883 3.117 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.054 0.946 9 C 0.261 3.739 10 H 0.046 0.954 11 N -0.811 5.811 12 C -0.122 4.122 13 C -0.119 4.119 14 C 0.026 3.974 15 F -0.157 7.157 16 C -0.128 4.128 17 C -0.186 4.186 18 C 0.216 3.784 19 N -0.868 5.868 20 H 0.256 0.744 21 H 0.299 0.701 22 H 0.319 0.681 23 H 0.126 0.874 24 H 0.121 0.879 25 H 0.119 0.881 26 H 0.412 0.588 27 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.645 -7.842 -2.608 9.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.123 4.123 3 Si 0.711 3.289 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.568 4.568 8 H 0.072 0.928 9 C 0.151 3.849 10 H 0.064 0.936 11 N -0.337 5.337 12 C -0.129 4.129 13 C -0.139 4.139 14 C 0.005 3.995 15 F -0.136 7.136 16 C -0.147 4.147 17 C -0.209 4.209 18 C 0.109 3.891 19 N -0.407 5.407 20 H 0.066 0.934 21 H 0.110 0.890 22 H 0.133 0.867 23 H 0.144 0.856 24 H 0.139 0.861 25 H 0.137 0.863 26 H 0.243 0.757 27 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 4.113 -7.050 -2.801 8.629 hybrid contribution 1.134 0.106 0.163 1.151 sum 5.247 -6.944 -2.638 9.095 Atomic orbital electron populations 1.70110 1.05646 1.25683 1.46599 1.24960 0.94623 0.98548 0.94189 0.86703 0.80308 0.84339 0.77544 1.19916 1.21131 1.21014 1.20865 0.92276 0.89223 1.54437 0.92758 1.18031 0.87226 0.88674 0.90937 0.93621 1.59142 1.28051 1.42113 1.04431 1.21207 1.01683 0.99654 0.90365 1.20741 0.98674 0.95349 0.99167 1.17422 1.03152 0.97225 0.81704 1.91391 1.93104 1.80993 1.48150 1.20573 1.01356 1.01322 0.91472 1.20293 1.03297 0.99533 0.97816 1.17680 0.93066 0.91018 0.87287 1.42581 1.52014 1.39744 1.06382 0.93437 0.89003 0.86745 0.85603 0.86120 0.86349 0.75662 0.78569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.68 12.77 55.43 0.71 -22.97 15 2 C 0.08 2.24 5.39 -17.82 -0.10 2.15 15 3 Si 0.88 20.80 29.54 -169.99 -5.02 15.78 15 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.29 -6.64 7.11 56.52 0.40 -6.23 15 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 7 C -0.53 -13.82 8.47 -34.44 -0.29 -14.11 15 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 15 9 C 0.26 6.14 2.21 -70.01 -0.16 5.98 15 10 H 0.05 1.15 7.09 -51.93 -0.37 0.79 15 11 N -0.81 -18.56 8.02 -6.65 -0.05 -18.61 15 12 C -0.12 -2.53 5.03 -104.43 -0.53 -3.06 15 13 C -0.12 -2.34 9.22 -39.54 -0.36 -2.71 15 14 C 0.03 0.48 7.30 -39.41 -0.29 0.19 15 15 F -0.16 -2.86 17.26 2.25 0.04 -2.82 15 16 C -0.13 -2.11 10.02 -39.54 -0.40 -2.50 15 17 C -0.19 -3.02 9.89 -39.39 -0.39 -3.41 15 18 C 0.22 3.99 6.73 -83.74 -0.56 3.43 15 19 N -0.87 -14.20 9.00 32.43 0.29 -13.91 15 20 H 0.26 6.88 8.31 -40.82 -0.34 6.54 15 21 H 0.30 6.17 9.06 -39.30 -0.36 5.81 15 22 H 0.32 7.08 7.28 -39.29 -0.29 6.79 15 23 H 0.13 2.39 6.24 -52.49 -0.33 2.06 15 24 H 0.12 1.67 8.06 -52.49 -0.42 1.24 15 25 H 0.12 1.57 8.06 -52.49 -0.42 1.15 15 26 H 0.41 7.44 6.86 -40.82 -0.28 7.16 15 27 H 0.39 4.97 8.84 -40.82 -0.36 4.61 15 LS Contribution 239.72 15.07 3.61 3.61 Total: -1.00 -28.55 239.72 -5.86 -34.41 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -2.37 Total: 18.55 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -3.07 Total: -14.04 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.95 Total: -55.49 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.55 -5.86 -34.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104577542.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.570 kcal (2) G-P(sol) polarization free energy of solvation -28.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds