Wall clock time and date at job start Mon Mar 30 2020 02:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00307 * 2 1 4 4 H 1.48501 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46821 * 299.99877 * 3 2 1 6 6 H 1.48494 * 109.47204 * 60.00209 * 3 2 1 7 7 C 1.37880 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99815 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47374 * 59.99971 * 9 7 2 11 11 N 1.46902 * 109.47181 * 299.99609 * 9 7 2 12 12 C 1.50706 * 109.47178 * 180.02562 * 9 7 2 13 13 C 1.38140 * 120.02497 * 99.71993 * 12 9 7 14 14 C 1.38446 * 120.04501 * 179.76990 * 13 12 9 15 15 F 1.35095 * 119.95097 * 180.25334 * 14 13 12 16 16 C 1.38488 * 120.10105 * 0.50754 * 14 13 12 17 17 C 1.38101 * 120.04768 * 359.74797 * 16 14 13 18 18 C 1.38855 * 120.02195 * 279.99402 * 12 9 7 19 19 N 1.39826 * 120.04797 * 0.02562 * 18 12 9 20 20 H 0.97001 * 119.99839 * 359.97438 * 1 2 3 21 21 H 1.00893 * 111.00154 * 176.04614 * 11 9 7 22 22 H 1.00903 * 110.99827 * 300.00788 * 11 9 7 23 23 H 1.07996 * 119.97784 * 0.02562 * 13 12 9 24 24 H 1.07996 * 119.97691 * 179.72477 * 16 14 13 25 25 H 1.08000 * 120.02570 * 179.97438 * 17 16 14 26 26 H 0.96992 * 120.00079 * 359.97438 * 19 18 12 27 27 H 0.97001 * 119.99255 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 1 0.6246 -2.5563 -0.8919 11 7 0.4060 -2.5778 1.1974 12 6 2.2302 -3.6447 -0.0015 13 6 2.5249 -4.3018 1.1773 14 6 3.4209 -5.3573 1.1772 15 9 3.7038 -6.0019 2.3303 16 6 4.0314 -5.7499 -0.0021 17 6 3.7437 -5.0924 -1.1820 18 6 2.8411 -4.0366 -1.1852 19 7 2.5490 -3.3688 -2.3784 20 1 -0.4850 0.8401 0.0004 21 1 -0.1580 -3.4143 1.1881 22 1 0.9637 -2.5268 2.0367 23 1 2.0530 -3.9947 2.0989 24 1 4.7334 -6.5707 0.0009 25 1 4.2204 -5.3986 -2.1015 26 1 1.9189 -2.6314 -2.3797 27 1 2.9765 -3.6431 -3.2048 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104577542.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:25 Heat of formation + Delta-G solvation = -41.047236 kcal Electronic energy + Delta-G solvation = -13603.438180 eV Core-core repulsion = 11081.363391 eV Total energy + Delta-G solvation = -2522.074788 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.60571 -40.38019 -36.29226 -35.00816 -33.67420 -30.81441 -29.04775 -27.94785 -24.93645 -22.90289 -21.69311 -18.51332 -18.23858 -18.06323 -17.55775 -16.53143 -16.34670 -15.92169 -15.84722 -14.85774 -14.66116 -14.39385 -13.93823 -13.64461 -13.61298 -12.95881 -12.70992 -12.61872 -12.12182 -11.52926 -11.28207 -11.16108 -10.55626 -9.70327 -8.92821 -8.20312 -7.92815 -6.17617 0.48013 0.59787 1.41330 1.46005 1.54800 2.46662 2.90918 3.19029 3.28572 3.59180 3.98206 4.07536 4.36012 4.53512 4.59373 5.01891 5.10752 5.21391 5.37989 5.40913 5.68863 5.79086 6.04508 6.18257 6.65780 6.72712 7.08684 7.17894 7.27334 7.54982 9.05700 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.036754 B = 0.009964 C = 0.009204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.633745 B = 2809.330738 C = 3041.408339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.287 1.287 7 C -0.531 4.531 8 H 0.041 0.959 9 C 0.269 3.731 10 H 0.023 0.977 11 N -0.823 5.823 12 C -0.153 4.153 13 C -0.127 4.127 14 C 0.010 3.990 15 F -0.158 7.158 16 C -0.114 4.114 17 C -0.176 4.176 18 C 0.207 3.793 19 N -0.861 5.861 20 H 0.255 0.745 21 H 0.311 0.689 22 H 0.321 0.679 23 H 0.121 0.879 24 H 0.155 0.845 25 H 0.157 0.843 26 H 0.403 0.597 27 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.146 -8.724 -3.372 11.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.213 1.213 7 C -0.570 4.570 8 H 0.059 0.941 9 C 0.159 3.841 10 H 0.040 0.960 11 N -0.350 5.350 12 C -0.160 4.160 13 C -0.147 4.147 14 C -0.011 4.011 15 F -0.137 7.137 16 C -0.134 4.134 17 C -0.199 4.199 18 C 0.099 3.901 19 N -0.400 5.400 20 H 0.064 0.936 21 H 0.122 0.878 22 H 0.135 0.865 23 H 0.139 0.861 24 H 0.173 0.827 25 H 0.174 0.826 26 H 0.232 0.768 27 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 5.634 -7.948 -3.591 10.383 hybrid contribution 0.703 0.296 0.382 0.853 sum 6.337 -7.652 -3.209 10.441 Atomic orbital electron populations 1.70216 1.06824 1.26220 1.48043 1.25586 0.95283 1.01361 0.94165 0.85783 0.78963 0.80919 0.77427 1.19963 1.20452 1.21285 1.21036 0.91696 0.90725 1.53498 0.94104 1.17681 0.87355 0.89007 0.90041 0.95960 1.59008 1.28493 1.43060 1.04430 1.20895 1.03014 1.00136 0.91985 1.20744 0.99225 0.95968 0.98728 1.17558 1.03671 0.97360 0.82549 1.91387 1.93099 1.80896 1.48340 1.20988 1.00543 1.01378 0.90453 1.20674 1.01945 0.97949 0.99304 1.17906 0.93305 0.91780 0.87084 1.42540 1.51650 1.39098 1.06761 0.93589 0.87756 0.86546 0.86106 0.82720 0.82559 0.76757 0.76472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.66 12.77 21.45 0.27 -49.38 15 2 C 0.04 2.15 5.39 84.66 0.46 2.60 15 3 Si 0.94 42.94 29.54 68.60 2.03 44.97 15 4 H -0.27 -12.41 7.11 99.48 0.71 -11.71 15 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 6 H -0.29 -13.11 7.11 99.48 0.71 -12.40 15 7 C -0.53 -27.96 8.47 25.60 0.22 -27.75 15 8 H 0.04 2.22 7.74 -2.91 -0.02 2.20 15 9 C 0.27 12.83 2.21 43.42 0.10 12.93 15 10 H 0.02 1.17 7.09 -2.39 -0.02 1.15 15 11 N -0.82 -38.32 8.02 -174.95 -1.40 -39.73 15 12 C -0.15 -6.30 5.03 -19.74 -0.10 -6.40 15 13 C -0.13 -4.92 9.22 22.30 0.21 -4.72 15 14 C 0.01 0.34 7.30 22.38 0.16 0.50 15 15 F -0.16 -5.48 17.26 44.97 0.78 -4.71 15 16 C -0.11 -3.36 10.02 22.30 0.22 -3.14 15 17 C -0.18 -5.07 9.89 22.40 0.22 -4.85 15 18 C 0.21 7.29 6.73 38.17 0.26 7.55 15 19 N -0.86 -26.97 9.00 -51.32 -0.46 -27.43 15 20 H 0.25 13.86 8.31 -92.71 -0.77 13.09 15 21 H 0.31 13.06 9.06 -89.70 -0.81 12.25 15 22 H 0.32 14.54 7.28 -89.69 -0.65 13.89 15 23 H 0.12 4.66 6.24 -2.91 -0.02 4.64 15 24 H 0.16 3.49 8.06 -2.91 -0.02 3.47 15 25 H 0.16 3.32 8.06 -2.91 -0.02 3.30 15 26 H 0.40 14.47 6.86 -92.71 -0.64 13.84 15 27 H 0.41 9.43 8.84 -92.71 -0.82 8.61 15 Total: -1.00 -60.14 239.72 1.28 -58.87 By element: Atomic # 1 Polarization: 42.36 SS G_CDS: -1.68 Total: 40.69 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 1.74 Total: -23.27 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -1.59 Total: -116.54 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.78 Total: -4.71 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -60.14 1.28 -58.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104577542.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.820 kcal (2) G-P(sol) polarization free energy of solvation -60.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds