Wall clock time and date at job start Mon Mar 30 2020 02:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 11 11 N 1.46902 * 109.47072 * 59.99845 * 9 7 2 12 12 C 1.50703 * 109.46925 * 179.97438 * 9 7 2 13 13 C 1.38268 * 119.91544 * 100.00446 * 12 9 7 14 14 C 1.38158 * 120.10877 * 179.97438 * 13 12 9 15 15 C 1.38828 * 119.94798 * 359.97438 * 14 13 12 16 16 N 1.39846 * 120.07866 * 180.02562 * 15 14 13 17 17 C 1.39075 * 119.84106 * 359.97438 * 15 14 13 18 18 F 1.35100 * 120.05361 * 179.97438 * 17 15 14 19 19 C 1.38279 * 119.88859 * 359.72789 * 17 15 14 20 20 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 21 21 H 1.00908 * 110.99828 * 296.04513 * 11 9 7 22 22 H 1.00903 * 110.99961 * 59.99933 * 11 9 7 23 23 H 1.07999 * 119.94573 * 359.96780 * 13 12 9 24 24 H 1.07999 * 120.02479 * 180.02562 * 14 13 12 25 25 H 0.97001 * 119.99600 * 359.97438 * 16 15 14 26 26 H 0.96997 * 119.99673 * 179.97438 * 16 15 14 27 27 H 1.08001 * 119.97754 * 180.27248 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8752 -0.6796 -0.8894 11 7 4.0008 -0.5023 1.2001 12 6 4.0139 -2.6149 -0.0001 13 6 4.4405 -3.1953 -1.1803 14 6 4.9023 -4.4975 -1.1849 15 6 4.9385 -5.2241 -0.0025 16 7 5.4059 -6.5422 -0.0040 17 6 4.5099 -4.6378 1.1835 18 9 4.5429 -5.3412 2.3365 19 6 4.0548 -3.3321 1.1816 20 1 -0.4850 0.8400 -0.0004 21 1 3.7313 0.4701 1.1921 22 1 3.6769 -0.9604 2.0388 23 1 4.4126 -2.6300 -2.1000 24 1 5.2356 -4.9494 -2.1074 25 1 5.7049 -6.9498 -0.8318 26 1 5.4311 -7.0487 0.8229 27 1 3.7258 -2.8739 2.1026 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104579171.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:18 Heat of formation + Delta-G solvation = -42.582457 kcal Electronic energy + Delta-G solvation = -13460.681216 eV Core-core repulsion = 10938.539856 eV Total energy + Delta-G solvation = -2522.141361 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.70905 -40.19828 -37.19660 -34.92809 -33.62038 -31.35140 -29.63621 -27.79800 -24.49578 -23.58092 -21.66021 -19.13873 -18.44762 -18.10837 -17.59417 -16.86659 -16.48153 -16.09426 -15.83518 -15.39531 -14.69388 -14.59939 -13.97462 -13.68537 -13.51395 -13.26155 -12.79425 -12.59806 -12.08575 -11.86104 -11.49806 -11.29833 -10.88773 -9.65434 -9.44813 -8.38541 -8.25617 -6.45247 0.39433 0.64793 1.27447 1.35241 1.44894 2.24205 2.86300 2.95159 2.97506 3.42106 3.90515 3.99829 4.23879 4.51262 4.53972 4.85281 5.05600 5.14892 5.27992 5.38339 5.42964 5.89391 5.96679 6.09500 6.43792 6.53425 6.59522 6.71264 6.99460 7.21563 8.79509 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.050771 B = 0.008659 C = 0.008433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.365094 B = 3232.940500 C = 3319.443072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.015 3.985 3 Si 0.940 3.060 4 H -0.258 1.258 5 H -0.293 1.293 6 H -0.242 1.242 7 C -0.546 4.546 8 H 0.030 0.970 9 C 0.218 3.782 10 H 0.050 0.950 11 N -0.839 5.839 12 C -0.081 4.081 13 C -0.087 4.087 14 C -0.165 4.165 15 C 0.175 3.825 16 N -0.865 5.865 17 C -0.006 4.006 18 F -0.153 7.153 19 C -0.107 4.107 20 H 0.268 0.732 21 H 0.316 0.684 22 H 0.335 0.665 23 H 0.137 0.863 24 H 0.162 0.838 25 H 0.413 0.587 26 H 0.403 0.597 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.877 -8.293 -1.255 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.183 4.183 3 Si 0.765 3.235 4 H -0.183 1.183 5 H -0.220 1.220 6 H -0.166 1.166 7 C -0.586 4.586 8 H 0.049 0.951 9 C 0.108 3.892 10 H 0.068 0.932 11 N -0.372 5.372 12 C -0.084 4.084 13 C -0.107 4.107 14 C -0.188 4.188 15 C 0.070 3.930 16 N -0.407 5.407 17 C -0.029 4.029 18 F -0.132 7.132 19 C -0.126 4.126 20 H 0.077 0.923 21 H 0.131 0.869 22 H 0.148 0.852 23 H 0.155 0.845 24 H 0.179 0.821 25 H 0.244 0.756 26 H 0.232 0.768 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.458 -8.370 -1.490 15.082 hybrid contribution -1.380 0.557 0.625 1.614 sum 11.078 -7.813 -0.865 13.583 Atomic orbital electron populations 1.70057 1.08248 1.28298 1.51398 1.25926 0.95563 1.03096 0.93758 0.85918 0.79339 0.78596 0.79619 1.18337 1.22003 1.16608 1.21906 0.92127 0.93157 1.51409 0.95150 1.18268 0.90642 0.89344 0.90914 0.93227 1.59717 1.66316 1.05418 1.05761 1.19551 0.99468 0.96313 0.93065 1.21062 0.96674 0.95284 0.97632 1.20688 1.06848 0.94353 0.96890 1.17722 0.95726 0.87369 0.92196 1.42173 1.73967 1.10385 1.14199 1.17217 1.12573 0.91719 0.81440 1.91367 1.95475 1.78497 1.47831 1.20681 1.00071 0.92383 0.99509 0.92289 0.86857 0.85236 0.84542 0.82085 0.75553 0.76788 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.72 13.96 21.45 0.30 -57.42 15 2 C 0.02 0.88 5.47 84.65 0.46 1.34 15 3 Si 0.94 42.49 24.61 68.60 1.69 44.17 15 4 H -0.26 -10.89 7.01 99.48 0.70 -10.19 15 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 15 6 H -0.24 -10.26 6.54 99.48 0.65 -9.61 15 7 C -0.55 -30.64 9.29 25.60 0.24 -30.41 15 8 H 0.03 1.93 7.98 -2.92 -0.02 1.91 15 9 C 0.22 10.12 2.48 43.43 0.11 10.23 15 10 H 0.05 2.30 7.05 -2.39 -0.02 2.29 15 11 N -0.84 -36.01 8.97 -174.94 -1.57 -37.58 15 12 C -0.08 -3.37 4.90 -19.84 -0.10 -3.47 15 13 C -0.09 -3.03 9.66 22.26 0.21 -2.81 15 14 C -0.17 -4.67 9.90 22.39 0.22 -4.45 15 15 C 0.18 5.14 6.76 38.20 0.26 5.40 15 16 N -0.86 -17.76 9.10 -51.21 -0.47 -18.22 15 17 C -0.01 -0.20 7.31 22.48 0.16 -0.04 15 18 F -0.15 -5.20 16.64 44.97 0.75 -4.45 15 19 C -0.11 -4.25 9.26 22.29 0.21 -4.05 15 20 H 0.27 15.35 8.31 -92.71 -0.77 14.58 15 21 H 0.32 13.46 4.30 -89.69 -0.39 13.08 15 22 H 0.33 13.97 7.32 -89.69 -0.66 13.31 15 23 H 0.14 4.29 8.03 -2.91 -0.02 4.27 15 24 H 0.16 3.24 8.06 -2.91 -0.02 3.22 15 25 H 0.41 5.89 8.84 -92.71 -0.82 5.07 15 26 H 0.40 7.64 8.32 -92.71 -0.77 6.87 15 27 H 0.12 4.83 6.64 -2.91 -0.02 4.82 15 Total: -1.00 -65.73 233.82 1.02 -64.71 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: -1.46 Total: 37.04 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 1.78 Total: -28.25 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -1.74 Total: -113.22 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.75 Total: -4.45 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.69 Total: 44.17 kcal Total: -65.73 1.02 -64.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104579171.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.127 kcal (2) G-P(sol) polarization free energy of solvation -65.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds