Wall clock time and date at job start Mon Mar 30 2020 02:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00220 * 2 1 4 4 H 1.48502 * 109.46909 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47127 * 239.99721 * 3 2 1 6 6 H 1.48497 * 109.47511 * 119.99791 * 3 2 1 7 7 C 1.37883 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00013 * 14.82510 * 7 2 1 9 9 C 1.50703 * 120.00032 * 194.82687 * 7 2 1 10 10 H 1.09002 * 109.47139 * 305.59039 * 9 7 2 11 11 N 1.46901 * 109.47264 * 65.59301 * 9 7 2 12 12 C 1.50696 * 109.47001 * 185.59270 * 9 7 2 13 13 C 1.38268 * 119.94566 * 279.72222 * 12 9 7 14 14 C 1.38289 * 120.16370 * 179.77017 * 13 12 9 15 15 C 1.38276 * 120.04609 * 0.50468 * 14 13 12 16 16 F 1.35102 * 120.05600 * 179.77092 * 15 14 13 17 17 C 1.39076 * 119.89182 * 359.75163 * 15 14 13 18 18 N 1.39851 * 120.08408 * 180.02562 * 17 15 14 19 19 C 1.38153 * 119.94495 * 100.00055 * 12 9 7 20 20 H 0.97003 * 119.99944 * 174.89800 * 1 2 3 21 21 H 1.00907 * 110.99678 * 299.15816 * 11 9 7 22 22 H 1.00897 * 111.00061 * 63.11365 * 11 9 7 23 23 H 1.08002 * 119.91712 * 0.02562 * 13 12 9 24 24 H 1.08000 * 119.97613 * 180.27946 * 14 13 12 25 25 H 0.97002 * 119.99815 * 179.97438 * 18 17 15 26 26 H 0.96998 * 119.99687 * 359.97438 * 18 17 15 27 27 H 1.08002 * 120.02528 * 359.97438 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6963 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 1.4915 -2.1139 -0.2384 9 6 3.4739 -1.2157 0.3345 10 1 4.0048 -0.5212 -0.3166 11 7 3.6637 -0.8160 1.7353 12 6 4.0147 -2.6076 0.1317 13 6 3.8200 -3.5721 1.1031 14 6 4.3102 -4.8521 0.9196 15 6 5.0062 -5.1683 -0.2327 16 9 5.4892 -6.4175 -0.4102 17 6 5.2079 -4.1984 -1.2088 18 7 5.9107 -4.5140 -2.3760 19 6 4.7092 -2.9163 -1.0220 20 1 -0.4850 -0.8367 -0.0747 21 1 3.3212 0.1198 1.8938 22 1 3.2234 -1.4731 2.3617 23 1 3.2802 -3.3263 2.0057 24 1 4.1525 -5.6043 1.6783 25 1 6.0503 -3.8366 -3.0562 26 1 6.2586 -5.4102 -2.5053 27 1 4.8640 -2.1608 -1.7781 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104581228.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:21 Heat of formation + Delta-G solvation = -27.461123 kcal Electronic energy + Delta-G solvation = -13434.996492 eV Core-core repulsion = 10913.510841 eV Total energy + Delta-G solvation = -2521.485650 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.36613 -38.81244 -35.35932 -33.63955 -31.79338 -29.75984 -27.89816 -25.75170 -22.70684 -22.22585 -19.77524 -17.76558 -17.33357 -16.74409 -15.97822 -15.18553 -15.14728 -14.58758 -13.90263 -13.41921 -13.05944 -12.90270 -12.68891 -12.25771 -12.03280 -11.63278 -10.79811 -10.75181 -10.20499 -10.16388 -10.01473 -9.34138 -8.54059 -8.19505 -7.54546 -7.15075 -6.51298 -4.27674 1.81592 2.01014 3.25987 3.33831 3.50443 4.03869 4.29970 4.33003 4.76593 5.12738 5.25526 5.53587 5.82344 5.96459 6.07668 6.17777 6.46722 6.62900 6.78790 6.91467 7.22102 7.47149 7.70592 7.81196 7.92055 8.17892 8.34962 8.48398 8.79535 9.45109 10.78076 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.048666 B = 0.008651 C = 0.008291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.207205 B = 3235.988725 C = 3376.500713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.030 3.970 3 Si 1.049 2.951 4 H -0.284 1.284 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.625 4.625 8 H 0.058 0.942 9 C 0.209 3.791 10 H 0.045 0.955 11 N -0.856 5.856 12 C 0.021 3.979 13 C -0.138 4.138 14 C -0.109 4.109 15 C -0.014 4.014 16 F -0.156 7.156 17 C 0.186 3.814 18 N -0.881 5.881 19 C -0.177 4.177 20 H 0.269 0.731 21 H 0.331 0.669 22 H 0.326 0.674 23 H 0.125 0.875 24 H 0.125 0.875 25 H 0.399 0.601 26 H 0.396 0.604 27 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.733 -5.874 -1.146 11.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.877 3.123 4 H -0.210 1.210 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.665 4.665 8 H 0.076 0.924 9 C 0.100 3.900 10 H 0.063 0.937 11 N -0.388 5.388 12 C 0.019 3.981 13 C -0.158 4.158 14 C -0.128 4.128 15 C -0.038 4.038 16 F -0.136 7.136 17 C 0.082 3.918 18 N -0.421 5.421 19 C -0.200 4.200 20 H 0.080 0.920 21 H 0.146 0.854 22 H 0.138 0.862 23 H 0.143 0.857 24 H 0.143 0.857 25 H 0.227 0.773 26 H 0.224 0.776 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.293 -4.337 -1.196 11.233 hybrid contribution -0.736 -2.035 -0.566 2.236 sum 9.557 -6.372 -1.761 11.620 Atomic orbital electron populations 1.70846 1.06840 1.30995 1.44544 1.25873 0.96297 1.02500 0.92966 0.83941 0.75202 0.75693 0.77461 1.20970 1.20791 1.19838 1.22634 0.93706 0.96281 1.53878 0.92371 1.18338 0.95156 0.88604 0.87915 0.93743 1.59845 1.65461 1.07055 1.06442 1.19932 0.89971 0.96875 0.91294 1.20579 1.02994 0.91685 1.00568 1.20831 0.98372 0.97787 0.95798 1.16996 1.08929 0.79729 0.98103 1.91357 1.87294 1.39067 1.95835 1.17666 0.94048 0.93152 0.86952 1.42243 1.64147 1.15684 1.20063 1.20354 1.05093 0.94200 1.00353 0.92045 0.85385 0.86229 0.85739 0.85746 0.77315 0.77648 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.70 55.43 0.76 -25.89 15 2 C 0.03 0.83 5.41 -17.82 -0.10 0.73 15 3 Si 1.05 23.89 26.42 -169.99 -4.49 19.39 15 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 6 H -0.27 -5.63 5.62 56.52 0.32 -5.31 15 7 C -0.63 -16.86 9.04 -34.44 -0.31 -17.17 15 8 H 0.06 1.73 7.99 -52.49 -0.42 1.31 15 9 C 0.21 4.84 2.48 -70.02 -0.17 4.66 15 10 H 0.04 1.04 6.71 -51.93 -0.35 0.69 15 11 N -0.86 -18.35 9.09 -6.65 -0.06 -18.41 15 12 C 0.02 0.44 4.90 -104.64 -0.51 -0.08 15 13 C -0.14 -2.67 9.27 -39.55 -0.37 -3.04 15 14 C -0.11 -1.90 10.02 -39.55 -0.40 -2.29 15 15 C -0.01 -0.25 7.31 -39.26 -0.29 -0.54 15 16 F -0.16 -2.61 16.64 2.25 0.04 -2.57 15 17 C 0.19 3.19 6.76 -83.67 -0.57 2.63 15 18 N -0.88 -11.66 9.10 32.46 0.30 -11.37 15 19 C -0.18 -3.36 9.51 -39.39 -0.37 -3.74 15 20 H 0.27 8.03 8.73 -40.82 -0.36 7.67 15 21 H 0.33 7.17 5.47 -39.29 -0.22 6.96 15 22 H 0.33 6.67 7.21 -39.29 -0.28 6.38 15 23 H 0.12 2.32 6.59 -52.49 -0.35 1.97 15 24 H 0.12 1.85 8.06 -52.49 -0.42 1.43 15 25 H 0.40 4.41 8.84 -40.82 -0.36 4.05 15 26 H 0.40 4.62 8.32 -40.82 -0.34 4.28 15 27 H 0.12 2.20 8.03 -52.49 -0.42 1.78 15 LS Contribution 235.44 15.07 3.55 3.55 Total: -1.00 -29.46 235.44 -5.39 -34.85 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -2.39 Total: 19.27 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -3.08 Total: -18.83 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.99 Total: -55.67 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -4.49 Total: 19.39 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.46 -5.39 -34.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104581228.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.393 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds