Wall clock time and date at job start Mon Mar 30 2020 02:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00220 * 2 1 4 4 H 1.48502 * 109.46909 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47127 * 239.99721 * 3 2 1 6 6 H 1.48497 * 109.47511 * 119.99791 * 3 2 1 7 7 C 1.37883 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00013 * 14.82510 * 7 2 1 9 9 C 1.50703 * 120.00032 * 194.82687 * 7 2 1 10 10 H 1.09002 * 109.47139 * 305.59039 * 9 7 2 11 11 N 1.46901 * 109.47264 * 65.59301 * 9 7 2 12 12 C 1.50696 * 109.47001 * 185.59270 * 9 7 2 13 13 C 1.38268 * 119.94566 * 279.72222 * 12 9 7 14 14 C 1.38289 * 120.16370 * 179.77017 * 13 12 9 15 15 C 1.38276 * 120.04609 * 0.50468 * 14 13 12 16 16 F 1.35102 * 120.05600 * 179.77092 * 15 14 13 17 17 C 1.39076 * 119.89182 * 359.75163 * 15 14 13 18 18 N 1.39851 * 120.08408 * 180.02562 * 17 15 14 19 19 C 1.38153 * 119.94495 * 100.00055 * 12 9 7 20 20 H 0.97003 * 119.99944 * 174.89800 * 1 2 3 21 21 H 1.00907 * 110.99678 * 299.15816 * 11 9 7 22 22 H 1.00897 * 111.00061 * 63.11365 * 11 9 7 23 23 H 1.08002 * 119.91712 * 0.02562 * 13 12 9 24 24 H 1.08000 * 119.97613 * 180.27946 * 14 13 12 25 25 H 0.97002 * 119.99815 * 179.97438 * 18 17 15 26 26 H 0.96998 * 119.99687 * 359.97438 * 18 17 15 27 27 H 1.08002 * 120.02528 * 359.97438 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6963 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 1.4915 -2.1139 -0.2384 9 6 3.4739 -1.2157 0.3345 10 1 4.0048 -0.5212 -0.3166 11 7 3.6637 -0.8160 1.7353 12 6 4.0147 -2.6076 0.1317 13 6 3.8200 -3.5721 1.1031 14 6 4.3102 -4.8521 0.9196 15 6 5.0062 -5.1683 -0.2327 16 9 5.4892 -6.4175 -0.4102 17 6 5.2079 -4.1984 -1.2088 18 7 5.9107 -4.5140 -2.3760 19 6 4.7092 -2.9163 -1.0220 20 1 -0.4850 -0.8367 -0.0747 21 1 3.3212 0.1198 1.8938 22 1 3.2234 -1.4731 2.3617 23 1 3.2802 -3.3263 2.0057 24 1 4.1525 -5.6043 1.6783 25 1 6.0503 -3.8366 -3.0562 26 1 6.2586 -5.4102 -2.5053 27 1 4.8640 -2.1608 -1.7781 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104581228.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:21 Heat of formation + Delta-G solvation = -49.707229 kcal Electronic energy + Delta-G solvation = -13435.961155 eV Core-core repulsion = 10913.510841 eV Total energy + Delta-G solvation = -2522.450314 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.71837 -40.26637 -37.00386 -35.14923 -33.75608 -31.25550 -29.28057 -27.69326 -24.39135 -23.67808 -21.39926 -19.79956 -18.73132 -18.08306 -17.43892 -16.73300 -16.52557 -15.91743 -15.65622 -14.99940 -14.81929 -14.45452 -14.34726 -14.03897 -13.47126 -13.33291 -12.49006 -12.25801 -11.94645 -11.75137 -11.52222 -11.30999 -10.63119 -9.70620 -9.41373 -8.68895 -8.41348 -6.47938 0.36232 0.58429 1.45904 1.52785 1.72315 2.43425 2.82492 2.86952 3.03207 3.38591 3.86547 3.99098 4.38922 4.42110 4.52828 4.68957 4.98497 5.14938 5.21825 5.42118 5.66867 5.90261 5.93277 5.98928 6.40500 6.47235 6.56836 6.84017 6.91151 7.33883 8.57021 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.048666 B = 0.008651 C = 0.008291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.207205 B = 3235.988725 C = 3376.500713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.018 4.018 3 Si 1.089 2.911 4 H -0.290 1.290 5 H -0.265 1.265 6 H -0.237 1.237 7 C -0.622 4.622 8 H 0.015 0.985 9 C 0.215 3.785 10 H 0.046 0.954 11 N -0.844 5.844 12 C -0.008 4.008 13 C -0.154 4.154 14 C -0.103 4.103 15 C -0.021 4.021 16 F -0.149 7.149 17 C 0.193 3.807 18 N -0.864 5.864 19 C -0.189 4.189 20 H 0.252 0.748 21 H 0.331 0.669 22 H 0.331 0.669 23 H 0.124 0.876 24 H 0.151 0.849 25 H 0.411 0.589 26 H 0.406 0.594 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.824 -6.052 -1.264 13.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.217 4.217 3 Si 0.910 3.090 4 H -0.217 1.217 5 H -0.190 1.190 6 H -0.162 1.162 7 C -0.662 4.662 8 H 0.033 0.967 9 C 0.105 3.895 10 H 0.064 0.936 11 N -0.376 5.376 12 C -0.009 4.009 13 C -0.175 4.175 14 C -0.122 4.122 15 C -0.044 4.044 16 F -0.128 7.128 17 C 0.087 3.913 18 N -0.405 5.405 19 C -0.213 4.213 20 H 0.061 0.939 21 H 0.145 0.855 22 H 0.143 0.857 23 H 0.142 0.858 24 H 0.168 0.832 25 H 0.241 0.759 26 H 0.236 0.764 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.420 -4.557 -1.333 13.297 hybrid contribution -1.363 -2.145 -0.579 2.607 sum 11.057 -6.703 -1.913 13.071 Atomic orbital electron populations 1.70985 1.08207 1.29958 1.47584 1.27307 0.96135 1.06297 0.91964 0.83473 0.74635 0.71305 0.79631 1.21665 1.19033 1.16188 1.22785 0.96084 0.94481 1.52849 0.96665 1.18190 0.92427 0.90408 0.88524 0.93571 1.59792 1.65083 1.07128 1.05579 1.19902 0.91861 0.96185 0.92966 1.20622 1.03886 0.92402 1.00540 1.21052 0.97216 0.97524 0.96378 1.17120 1.08939 0.80104 0.98285 1.91377 1.87142 1.38530 1.95791 1.17665 0.93421 0.92375 0.87864 1.42223 1.62662 1.16701 1.18960 1.20438 1.05463 0.95331 1.00044 0.93900 0.85454 0.85661 0.85805 0.83156 0.75853 0.76400 0.84872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.70 21.45 0.29 -56.44 15 2 C -0.02 -0.99 5.41 84.66 0.46 -0.53 15 3 Si 1.09 47.17 26.42 68.60 1.81 48.98 15 4 H -0.29 -12.88 7.11 99.48 0.71 -12.17 15 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 15 6 H -0.24 -8.92 5.62 99.48 0.56 -8.36 15 7 C -0.62 -34.09 9.04 25.60 0.23 -33.86 15 8 H 0.01 0.93 7.99 -2.91 -0.02 0.91 15 9 C 0.21 9.76 2.48 43.42 0.11 9.87 15 10 H 0.05 2.09 6.71 -2.39 -0.02 2.07 15 11 N -0.84 -34.97 9.09 -174.95 -1.59 -36.56 15 12 C -0.01 -0.32 4.90 -19.88 -0.10 -0.41 15 13 C -0.15 -5.83 9.27 22.29 0.21 -5.63 15 14 C -0.10 -3.39 10.02 22.29 0.22 -3.17 15 15 C -0.02 -0.68 7.31 22.48 0.16 -0.52 15 16 F -0.15 -4.55 16.64 44.97 0.75 -3.81 15 17 C 0.19 6.19 6.76 38.20 0.26 6.45 15 18 N -0.86 -20.34 9.10 -51.21 -0.47 -20.80 15 19 C -0.19 -6.92 9.51 22.39 0.21 -6.71 15 20 H 0.25 15.73 8.73 -92.71 -0.81 14.92 15 21 H 0.33 13.62 5.47 -89.69 -0.49 13.13 15 22 H 0.33 13.26 7.21 -89.70 -0.65 12.61 15 23 H 0.12 4.57 6.59 -2.91 -0.02 4.55 15 24 H 0.15 4.08 8.06 -2.91 -0.02 4.05 15 25 H 0.41 7.86 8.84 -92.71 -0.82 7.04 15 26 H 0.41 8.18 8.32 -92.71 -0.77 7.41 15 27 H 0.13 4.50 8.03 -2.91 -0.02 4.47 15 Total: -1.00 -63.46 235.44 0.89 -62.56 By element: Atomic # 1 Polarization: 42.25 SS G_CDS: -1.67 Total: 40.58 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 1.77 Total: -34.51 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -1.76 Total: -113.81 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.75 Total: -3.81 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.81 Total: 48.98 kcal Total: -63.46 0.89 -62.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104581228.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.856 kcal (2) G-P(sol) polarization free energy of solvation -63.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds