Wall clock time and date at job start Mon Mar 30 2020 02:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 N 1.46899 * 109.47429 * 59.99659 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 C 1.38883 * 120.05380 * 104.72353 * 12 9 7 14 14 N 1.39667 * 120.06112 * 359.97126 * 13 12 9 15 15 C 1.38910 * 119.87896 * 179.74360 * 13 12 9 16 16 C 1.38134 * 119.97249 * 0.52716 * 15 13 12 17 17 C 1.38234 * 120.10087 * 359.74768 * 16 15 13 18 18 C 1.38304 * 120.04474 * 284.99547 * 12 9 7 19 19 F 1.35096 * 119.99089 * 0.02562 * 18 12 9 20 20 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 21 21 H 1.00895 * 110.99738 * 296.04558 * 11 9 7 22 22 H 1.00899 * 110.99492 * 59.99988 * 11 9 7 23 23 H 0.96995 * 120.00008 * 0.02562 * 14 13 12 24 24 H 0.97000 * 119.99809 * 180.02562 * 14 13 12 25 25 H 1.07999 * 120.01840 * 180.25056 * 15 13 12 26 26 H 1.08003 * 119.95240 * 179.71984 * 16 15 13 27 27 H 1.07995 * 119.93680 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8751 -0.6798 -0.8895 11 7 4.0007 -0.5024 1.2001 12 6 4.0137 -2.6150 -0.0013 13 6 4.5340 -3.1676 -1.1644 14 7 4.5922 -2.4078 -2.3349 15 6 5.0009 -4.4759 -1.1602 16 6 4.9368 -5.2278 -0.0032 17 6 4.4135 -4.6786 1.1524 18 6 3.9520 -3.3724 1.1542 19 9 3.4407 -2.8386 2.2850 20 1 -0.4850 0.8401 0.0004 21 1 3.7313 0.4699 1.1920 22 1 3.6769 -0.9605 2.0387 23 1 4.2693 -1.4932 -2.3359 24 1 4.9554 -2.7949 -3.1468 25 1 5.4097 -4.9066 -2.0623 26 1 5.2957 -6.2465 -0.0015 27 1 4.3643 -5.2690 2.0554 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104581837.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:27 Heat of formation + Delta-G solvation = -12.474173 kcal Electronic energy + Delta-G solvation = -13930.479033 eV Core-core repulsion = 11409.643265 eV Total energy + Delta-G solvation = -2520.835767 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.12922 -38.84083 -34.97329 -33.77163 -31.83737 -29.51731 -28.06687 -26.03653 -23.10961 -21.66790 -20.09056 -17.50352 -17.14258 -16.47162 -15.61196 -14.92216 -14.66226 -14.54898 -14.46613 -13.82943 -13.11804 -12.67633 -12.37131 -12.08637 -11.99175 -11.49260 -11.10173 -10.76067 -10.53177 -10.05726 -10.01552 -9.47320 -8.77073 -8.01139 -7.52290 -6.97893 -6.21861 -4.24605 1.89565 2.06017 3.13908 3.24598 3.26580 4.22669 4.26434 4.36262 5.04476 5.09341 5.34373 5.54258 5.63345 5.88219 6.15353 6.22094 6.51445 6.55312 6.82680 6.90262 7.07204 7.44387 7.49429 7.94441 8.12636 8.24689 8.33135 8.54783 8.86428 9.36842 10.90935 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.038238 B = 0.012264 C = 0.010942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.077762 B = 2282.526692 C = 2558.269831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.072 3.928 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.261 1.261 6 H -0.291 1.291 7 C -0.541 4.541 8 H 0.075 0.925 9 C 0.220 3.780 10 H 0.044 0.956 11 N -0.857 5.857 12 C -0.135 4.135 13 C 0.241 3.759 14 N -0.872 5.872 15 C -0.217 4.217 16 C -0.066 4.066 17 C -0.220 4.220 18 C 0.153 3.847 19 F -0.131 7.131 20 H 0.266 0.734 21 H 0.315 0.685 22 H 0.341 0.659 23 H 0.403 0.597 24 H 0.392 0.608 25 H 0.117 0.883 26 H 0.121 0.879 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.463 -5.771 -1.999 11.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.186 1.186 6 H -0.218 1.218 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.110 3.890 10 H 0.061 0.939 11 N -0.394 5.394 12 C -0.140 4.140 13 C 0.134 3.866 14 N -0.412 5.412 15 C -0.240 4.240 16 C -0.084 4.084 17 C -0.241 4.241 18 C 0.133 3.867 19 F -0.110 7.110 20 H 0.076 0.924 21 H 0.130 0.870 22 H 0.157 0.843 23 H 0.235 0.765 24 H 0.220 0.780 25 H 0.135 0.865 26 H 0.139 0.861 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.991 -5.817 -2.194 11.768 hybrid contribution -0.883 1.366 0.063 1.628 sum 9.108 -4.452 -2.130 10.359 Atomic orbital electron populations 1.69900 1.06160 1.27080 1.49508 1.25030 0.94855 0.98931 0.94297 0.87009 0.80109 0.83936 0.78728 1.20075 1.18603 1.21784 1.21647 0.89569 0.94909 1.51979 0.90671 1.18173 0.93530 0.86650 0.90635 0.93859 1.59775 1.67210 1.05605 1.06818 1.19511 1.04499 0.98591 0.91443 1.17294 0.92369 0.90345 0.86543 1.42558 1.72126 1.16896 1.09590 1.20436 1.10608 0.93697 0.99300 1.20448 0.97641 0.98690 0.91670 1.20746 1.08660 0.94703 1.00019 1.17169 0.96026 0.91384 0.82150 1.91321 1.84565 1.85947 1.49120 0.92423 0.86984 0.84272 0.76508 0.78045 0.86519 0.86130 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.96 55.43 0.77 -26.12 15 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 15 3 Si 0.87 21.05 24.61 -169.99 -4.18 16.86 15 4 H -0.27 -6.45 7.01 56.52 0.40 -6.05 15 5 H -0.26 -6.01 6.54 56.52 0.37 -5.65 15 6 H -0.29 -7.01 7.11 56.52 0.40 -6.60 15 7 C -0.54 -15.21 9.21 -34.44 -0.32 -15.52 15 8 H 0.08 2.36 7.98 -52.49 -0.42 1.94 15 9 C 0.22 5.29 2.23 -70.01 -0.16 5.13 15 10 H 0.04 1.03 4.96 -51.93 -0.26 0.77 15 11 N -0.86 -20.13 9.03 -6.65 -0.06 -20.19 15 12 C -0.13 -2.93 4.91 -104.36 -0.51 -3.45 15 13 C 0.24 4.46 6.73 -83.80 -0.56 3.90 15 14 N -0.87 -13.83 9.00 32.40 0.29 -13.54 15 15 C -0.22 -3.43 9.89 -39.37 -0.39 -3.82 15 16 C -0.07 -1.00 10.04 -39.62 -0.40 -1.40 15 17 C -0.22 -3.83 10.02 -39.47 -0.40 -4.22 15 18 C 0.15 3.22 7.01 -39.45 -0.28 2.94 15 19 F -0.13 -2.89 14.31 2.25 0.03 -2.86 15 20 H 0.27 7.52 8.31 -40.82 -0.34 7.18 15 21 H 0.31 7.40 4.30 -39.29 -0.17 7.23 15 22 H 0.34 8.01 6.13 -39.29 -0.24 7.76 15 23 H 0.40 6.83 6.56 -40.82 -0.27 6.57 15 24 H 0.39 4.75 8.84 -40.82 -0.36 4.39 15 25 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 26 H 0.12 1.41 8.06 -52.48 -0.42 0.98 15 27 H 0.12 1.82 8.06 -52.49 -0.42 1.40 15 LS Contribution 228.35 15.07 3.44 3.44 Total: -1.00 -30.94 228.35 -4.97 -35.91 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -2.16 Total: 20.97 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -3.11 Total: -14.47 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 1.01 Total: -59.85 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.03 Total: -2.86 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.18 Total: 16.86 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -30.94 -4.97 -35.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104581837.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.433 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds