Wall clock time and date at job start Mon Mar 30 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31875 * 119.63587 * 2 1 4 4 C 1.31844 * 121.74963 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.58906 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.46784 * 65.02066 * 5 4 3 7 7 N 1.46900 * 109.47228 * 185.02291 * 5 4 3 8 8 C 1.50699 * 109.46872 * 305.02161 * 5 4 3 9 9 H 1.08001 * 120.00484 * 0.02562 * 8 5 4 10 10 C 1.37884 * 119.99499 * 179.97438 * 8 5 4 11 11 N 1.31511 * 120.00154 * 0.02562 * 10 8 5 12 12 Si 1.86801 * 119.99640 * 180.02562 * 10 8 5 13 13 H 1.48499 * 109.47252 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46895 * 120.00407 * 12 10 8 15 15 H 1.48500 * 109.47237 * 240.00398 * 12 10 8 16 16 C 1.38238 * 120.82205 * 359.97438 * 4 3 2 17 17 C 1.38591 * 119.18924 * 0.25778 * 16 4 3 18 18 C 1.38421 * 119.64066 * 179.97438 * 2 1 3 19 19 F 1.35106 * 120.44122 * 0.02562 * 18 2 1 20 20 H 1.09001 * 109.47122 * 89.99831 * 1 2 3 21 21 H 1.08998 * 109.46740 * 209.99984 * 1 2 3 22 22 H 1.08998 * 109.47118 * 329.99484 * 1 2 3 23 23 H 1.00903 * 110.99494 * 296.04727 * 7 5 4 24 24 H 1.00903 * 111.00122 * 59.99817 * 7 5 4 25 25 H 0.97002 * 119.99919 * 179.97438 * 11 10 8 26 26 H 1.08002 * 120.40263 * 179.97438 * 16 4 3 27 27 H 1.07999 * 120.80092 * 179.72215 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1591 1.1462 0.0000 4 6 3.4767 1.1949 -0.0005 5 6 4.1720 2.5319 -0.0011 6 1 3.9549 3.0547 0.9305 7 7 5.6219 2.3298 -0.1228 8 6 3.6798 3.3535 -1.1646 9 1 2.9375 2.9482 -1.8363 10 6 4.1766 4.6230 -1.3711 11 7 5.0801 5.1168 -0.5529 12 14 3.5660 5.6417 -2.8130 13 1 2.5573 4.8641 -3.5765 14 1 2.9469 6.8934 -2.3078 15 1 4.7082 5.9777 -3.7006 16 6 4.2283 0.0347 -0.0005 17 6 3.5803 -1.1904 -0.0054 18 6 2.1916 -1.2031 0.0005 19 9 1.5177 -2.3741 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5139 23 1 5.9867 1.8367 0.6784 24 1 5.8490 1.8467 -0.9790 25 1 5.4298 6.0098 -0.6984 26 1 5.3072 0.0824 -0.0013 27 1 4.1418 -2.1130 -0.0101 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104668434.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:30 Heat of formation + Delta-G solvation = -9.895981 kcal Electronic energy + Delta-G solvation = -13454.933457 eV Core-core repulsion = 10934.209489 eV Total energy + Delta-G solvation = -2520.723969 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.65351 -39.73995 -34.93266 -32.66507 -31.64379 -30.57632 -26.94699 -26.22229 -23.47799 -22.18885 -20.26685 -17.28872 -16.90426 -16.40957 -15.55985 -15.29562 -14.51652 -14.13619 -13.71025 -13.49097 -13.41675 -12.81994 -12.25847 -12.22612 -12.00024 -11.71705 -11.21438 -10.82582 -10.64960 -9.89977 -9.43378 -9.28188 -8.94526 -8.46716 -8.07144 -7.29490 -5.88467 -4.01016 1.39869 1.54342 3.34799 3.42697 3.47557 4.11459 4.39643 4.51274 4.72396 4.90709 5.18457 5.30978 5.41648 5.73957 5.78378 5.80326 6.07816 6.14131 6.25245 6.27236 6.52177 7.14154 7.29267 7.92851 8.07857 8.38960 8.68418 8.87209 9.09492 9.66103 11.16639 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.042362 B = 0.009108 C = 0.007961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.817726 B = 3073.524942 C = 3516.368011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.103 3.897 3 N -0.441 5.441 4 C 0.137 3.863 5 C 0.264 3.736 6 H 0.064 0.936 7 N -0.806 5.806 8 C -0.517 4.517 9 H 0.057 0.943 10 C 0.081 3.919 11 N -0.850 5.850 12 Si 0.888 3.112 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.285 1.285 16 C -0.176 4.176 17 C -0.104 4.104 18 C 0.006 3.994 19 F -0.142 7.142 20 H 0.077 0.923 21 H 0.070 0.930 22 H 0.082 0.918 23 H 0.300 0.700 24 H 0.322 0.678 25 H 0.256 0.744 26 H 0.138 0.862 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.593 -10.677 1.415 11.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.038 4.038 3 N -0.150 5.150 4 C -0.003 4.003 5 C 0.153 3.847 6 H 0.081 0.919 7 N -0.333 5.333 8 C -0.556 4.556 9 H 0.076 0.924 10 C -0.125 4.125 11 N -0.485 5.485 12 Si 0.716 3.284 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.197 4.197 17 C -0.131 4.131 18 C -0.015 4.015 19 F -0.121 7.121 20 H 0.096 0.904 21 H 0.089 0.911 22 H 0.101 0.899 23 H 0.112 0.888 24 H 0.134 0.866 25 H 0.065 0.935 26 H 0.156 0.844 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.897 -8.962 1.472 9.882 hybrid contribution -0.050 -1.583 -0.835 1.791 sum -3.947 -10.545 0.637 11.277 Atomic orbital electron populations 1.20642 0.88735 1.03366 1.03149 1.21579 0.97708 0.87391 0.97085 1.67648 1.10437 1.25783 1.11162 1.23806 0.89170 0.99122 0.88202 1.18220 0.82532 0.84205 0.99701 0.91898 1.59227 1.14320 1.55792 1.03965 1.20741 1.23888 0.99104 1.11862 0.92442 1.24936 0.94339 0.97308 0.95911 1.70104 1.26921 1.15654 1.35808 0.86624 0.78599 0.80303 0.82897 1.19913 1.21026 1.21116 1.21968 1.01934 0.92006 1.03750 1.21486 0.92408 0.99596 0.99583 1.18504 0.90879 0.82036 1.10105 1.91427 1.80295 1.45844 1.94552 0.90422 0.91079 0.89921 0.88818 0.86573 0.93460 0.84440 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.46 10.00 36.01 0.36 -1.10 15 2 C 0.10 1.87 6.79 -82.51 -0.56 1.31 15 3 N -0.44 -9.48 9.87 -5.68 -0.06 -9.54 15 4 C 0.14 2.93 6.11 -82.59 -0.50 2.42 15 5 C 0.26 6.44 3.10 -70.01 -0.22 6.23 15 6 H 0.06 1.71 8.14 -51.93 -0.42 1.29 15 7 N -0.81 -17.81 7.83 -6.65 -0.05 -17.86 15 8 C -0.52 -14.18 8.53 -34.44 -0.29 -14.47 15 9 H 0.06 1.63 7.68 -52.49 -0.40 1.22 15 10 C 0.08 2.26 5.39 -17.82 -0.10 2.16 15 11 N -0.85 -24.40 12.77 55.43 0.71 -23.69 15 12 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 15 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 14 H -0.28 -6.82 7.11 56.52 0.40 -6.41 15 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 16 C -0.18 -3.09 9.06 -39.45 -0.36 -3.45 15 17 C -0.10 -1.65 10.16 -39.21 -0.40 -2.05 15 18 C 0.01 0.11 7.27 -39.28 -0.29 -0.18 15 19 F -0.14 -2.22 16.49 2.25 0.04 -2.18 15 20 H 0.08 1.04 8.14 -51.93 -0.42 0.61 15 21 H 0.07 0.88 7.63 -51.93 -0.40 0.48 15 22 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 23 H 0.30 5.69 8.09 -39.29 -0.32 5.38 15 24 H 0.32 6.73 8.26 -39.29 -0.32 6.41 15 25 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 26 H 0.14 2.10 6.19 -52.49 -0.33 1.77 15 27 H 0.14 1.70 8.06 -52.49 -0.42 1.28 15 LS Contribution 242.88 15.07 3.66 3.66 Total: -1.00 -29.85 242.88 -5.67 -35.52 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -2.59 Total: 6.79 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -2.35 Total: -9.13 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.60 Total: -51.09 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.85 -5.67 -35.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104668434.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.622 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds